 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Pahal.C04521.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
|
| Family |
Dof |
| Protein Properties |
Length: 240aa MW: 24310 Da PI: 9.7134 |
| Description |
Dof family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Pahal.C04521.1 | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | zf-Dof | 111.3 | 4.5e-35 | 31 | 85 | 6 | 60 |
zf-Dof 6 lkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkk 60
+cprC s++tkfCyynny+++qPr+fC+aCrryWt GG+lrnvPvGg++rk+ +
Pahal.C04521.1 31 ERCPRCASRDTKFCYYNNYNTAQPRHFCRACRRYWTLGGSLRNVPVGGSARKRPR 85
68*************************************************9865 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 240 aa
Download sequence Send
to blast |
MEAPLHRSPA PLPPPPDALL LRQPAAAAGR ERCPRCASRD TKFCYYNNYN TAQPRHFCRA 60
CRRYWTLGGS LRNVPVGGSA RKRPRPARPT RAIAAAVAAA TTTAPAPSGP FAAASHVAAA 120
SAPALQGGGL LGSLPLLALG AAPLLEGRLG SDDLGLGQPA LLAAGAGDLA QLAFGAGPLP 180
WPVATTILEG ERAEAAWKSC GAFPLPPAAA LWQELVAAAP PAEAGGLPLH HGGSPHLLL*
|
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AY661659 | 8e-71 | AY661659.1 Sorghum bicolor clone BAC 75D9, complete sequence. |
| GenBank | HQ540084 | 8e-71 | HQ540084.1 Sorghum bicolor clone SbDof1 Dof-type zinc finger protein gene, complete cds. |
