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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pahal.C04518.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | B3 | ||||||||
Protein Properties | Length: 72aa MW: 8100.16 Da PI: 4.5815 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 31.7 | 2.8e-10 | 11 | 59 | 44 | 95 |
-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEE CS B3 44 rsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvvk 95 +We l ++g y l++ W++F k+n L++gD+++F+l ++ + + +++ Pahal.C04518.1 11 SEWEALL--ISSDGLYQLGGRWNQFIKDNMLRQGDICLFELLKEnEPQ--LIG 59 6899999..777777*************************98753444..555 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50863 | 10.052 | 1 | 64 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 2.16E-10 | 9 | 58 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 8.6E-10 | 9 | 56 | IPR015300 | DNA-binding pseudobarrel domain |
Pfam | PF02362 | 1.3E-7 | 10 | 58 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 72 aa Download sequence Send to blast |
MNPTDSPWHK SEWEALLISS DGLYQLGGRW NQFIKDNMLR QGDICLFELL KENEPQLIGG 60 CANQTTHPLV T* |
Link Out ? help Back to Top | |
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Phytozome | Pahal.C04518.1 |