PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pahal.C04513.3 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | B3 | ||||||||
Protein Properties | Length: 229aa MW: 26352.8 Da PI: 6.7853 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 58 | 1.8e-18 | 39 | 110 | 13 | 89 |
TT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS B3 13 sgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 + +++p kf+++++g+ ++ l l+ +sg++W v + +k++++ +lt+GWk+Fvka++Lke+D ++F+ + Pahal.C04513.3 39 R-GISIPAKFVKNFNGQITK--GLDLKVPSGETWHVCV--DKRDDELLLTSGWKDFVKAHELKENDLLIFTCRAGQH 110 3.389******999888555..5***************..*******************************554344 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 1.06E-19 | 22 | 105 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 11.843 | 26 | 120 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 8.5E-19 | 28 | 106 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 8.75E-19 | 28 | 104 | No hit | No description |
SMART | SM01019 | 1.8E-6 | 29 | 119 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.1E-15 | 39 | 112 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 229 aa Download sequence Send to blast |
MMVEKGCESC REWREHYYRE HMDVTKIRFF KFMTGDFVRG ISIPAKFVKN FNGQITKGLD 60 LKVPSGETWH VCVDKRDDEL LLTSGWKDFV KAHELKENDL LIFTCRAGQH AEPYTLTDSE 120 EASMAPQLVG STHMASTSKK YNCKTKPRKE PQSLNSSSYH VKHEGIEEEE SDDMYADSKF 180 YYSRMANQFT VEEKENILSL ASIQPENPAF VAVLQKSHCQ RRSNFLVT* |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025808343.1 | 1e-164 | B3 domain-containing protein Os12g0592300-like | ||||
Swissprot | Q2QMT2 | 2e-82 | Y1223_ORYSJ; B3 domain-containing protein Os12g0592300 | ||||
TrEMBL | A0A2S3HFB7 | 1e-173 | A0A2S3HFB7_9POAL; Uncharacterized protein | ||||
STRING | Pavir.J16679.1.p | 1e-135 | (Panicum virgatum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G33280.1 | 3e-14 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | Pahal.C04513.3 |