PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

3D Structure |

Orthologous Group |

Basic Information? help Back to Top

TF ID

Pahal.C04463.1

Organism

Panicum hallii

Taxonomic ID

206008

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

GRAS

Protein Properties

Length: 696aa MW: 76291 Da PI: 5.1825

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pahal.C04463.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	333.9	2.9e-102	339	671	1	334
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 l++lL++cA+av+++d + a++lL++++++asp+gd++qRla++f+e+L+arla+++s +y++l +++ts ++ l+a++l+ + + k+ + Pahal.C04463.1 339 LRTLLIHCAQAVATDDRRSATELLKQIKQHASPQGDATQRLAHCFAEGLQARLAGTGSMVYQSLMAKRTS---AVDILQAYQLYMAAICFKKVVF 430 6789**********************************************************999998...9***************** PP GRAS 96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrled 188 + Nq+I++a g++++Hi+D++i +G+QWp++l+ +a+R++gpp++RiTg++ p++g ++++eetg+rL+k+A+e+gvpf+++v++a+++e+ Pahal.C04463.1 431 IFSNQTIYNASLGKKKIHIVDYGIHYGFQWPCFLRRIACREGGPPEVRITGIDLPQPGfrPTQRIEETGRRLSKYAQEFGVPFKYQVIAASKMET 525 *****************************************************9********************************* PP GRAS 189 leleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseeri 283 ++ e+L+++p+E+l+Vn+++q ++l+desv +es+rd L+ +++++P+ +++ + + +++ F++rf eal yysalfd l+++ pr+s++r+ Pahal.C04463.1 526 IRAEDLNLDPEEVLIVNCIYQFKNLMDESVLIESPRDVALNNIRKMRPHAFIHGIVNGSFSAPFFVTRFREALFYYSALFDVLDTTTPRDSNQRM 620 ******************************************************************************************* PP GRAS 284 kvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaa 334 +E+ ++gr++ nv+aceg++r+er et+++W+ r ++aG+k++pl+ +++ Pahal.C04463.1 621 LIEQNIFGRAALNVIACEGTDRVERPETYKQWQVRNQRAGLKQLPLNPNIV 671 ********************************************98876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	62.32	313	691	IPR005202	Transcription factor GRAS
Pfam	PF03514	9.9E-100	339	671	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 696 aa Download sequence Send to blast
MGSSYDPSPS PGAVADDLAF YLSDLGPASP SAYLDLPPTP QHEKPQQPQH AQPDGGAAAS 60 PEDMVLPFIS RMLMEEDIDD KFFYEYPDHP ALLQAQQPFL DILSDDASSS PSAARSGASV 120 THPSTSSASS DAAANAPLTP AAVDSYAQFN GFDLDPAAFF SGGANSDLMS SAFLKGMEEA 180 NKFLPSQDKL VIDLDPPDDA KRFLLPAENK LAASGFNGTA PAAAVAVKVE EAVVPWPDAV 240 PGGGGGGRGR KNRFDDDDED LEMDRRSSKQ SALEGDGDDR DVFDKYMITS HEMCVEQMEK 300 LRIAMQEEAA KKEAAAGGGN GKSKAKGGGR RGGREVVDLR TLLIHCAQAV ATDDRRSATE 360 LLKQIKQHAS PQGDATQRLA HCFAEGLQAR LAGTGSMVYQ SLMAKRTSAV DILQAYQLYM 420 AAICFKKVVF IFSNQTIYNA SLGKKKIHIV DYGIHYGFQW PCFLRRIACR EGGPPEVRIT 480 GIDLPQPGFR PTQRIEETGR RLSKYAQEFG VPFKYQVIAA SKMETIRAED LNLDPEEVLI 540 VNCIYQFKNL MDESVLIESP RDVALNNIRK MRPHAFIHGI VNGSFSAPFF VTRFREALFY 600 YSALFDVLDT TTPRDSNQRM LIEQNIFGRA ALNVIACEGT DRVERPETYK QWQVRNQRAG 660 LKQLPLNPNI VQGWKGRILY AISTWVANDD AVSYF*

Sequence ? help Back to Top

Protein Sequence Length: 696 aa Download sequence Send to blast

MGSSYDPSPS PGAVADDLAF YLSDLGPASP SAYLDLPPTP QHEKPQQPQH AQPDGGAAAS  60
PEDMVLPFIS RMLMEEDIDD KFFYEYPDHP ALLQAQQPFL DILSDDASSS PSAARSGASV  120
THPSTSSASS DAAANAPLTP AAVDSYAQFN GFDLDPAAFF SGGANSDLMS SAFLKGMEEA  180
NKFLPSQDKL VIDLDPPDDA KRFLLPAENK LAASGFNGTA PAAAVAVKVE EAVVPWPDAV  240
PGGGGGGRGR KNRFDDDDED LEMDRRSSKQ SALEGDGDDR DVFDKYMITS HEMCVEQMEK  300
LRIAMQEEAA KKEAAAGGGN GKSKAKGGGR RGGREVVDLR TLLIHCAQAV ATDDRRSATE  360
LLKQIKQHAS PQGDATQRLA HCFAEGLQAR LAGTGSMVYQ SLMAKRTSAV DILQAYQLYM  420
AAICFKKVVF IFSNQTIYNA SLGKKKIHIV DYGIHYGFQW PCFLRRIACR EGGPPEVRIT  480
GIDLPQPGFR PTQRIEETGR RLSKYAQEFG VPFKYQVIAA SKMETIRAED LNLDPEEVLI  540
VNCIYQFKNL MDESVLIESP RDVALNNIRK MRPHAFIHGI VNGSFSAPFF VTRFREALFY  600
YSALFDVLDT TTPRDSNQRM LIEQNIFGRA ALNVIACEGT DRVERPETYK QWQVRNQRAG  660
LKQLPLNPNI VQGWKGRILY AISTWVANDD AVSYF*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5hyz_A	4e-41	343	667	8	329	GRAS family transcription factor containing protein, expressed
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025807224.1	0.0	scarecrow-like protein 34
TrEMBL	A0A2T7EIB1	0.0	A0A2T7EIB1_9POAL; Uncharacterized protein
STRING	GRMZM2G159475_P01	0.0	(Zea mays)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP231	31	297

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G37650.1	1e-143	GRAS family protein

Link Out ? help Back to Top
Phytozome	Pahal.C04463.1