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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pahal.C04462.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | GRAS | ||||||||
Protein Properties | Length: 696aa MW: 76877.8 Da PI: 5.561 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 356.8 | 3.2e-109 | 312 | 684 | 1 | 373 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvse.lykalppsetseknsseelaalklfsevsPilkfs 94 l++lLl+cA+av+++d + a +lL++++ +asp+gd++qRla++f+e+L+arla+++s+ +y++l +++ts +++ l+a++l+ + + k + Pahal.C04462.1 312 LRTLLLHCAQAVATDDRRSAIELLKQIKRHASPQGDATQRLAHCFAEGLQARLAGTGSRmVYQSLMAKRTS---VVDILQAYQLYMAAICFKKAA 403 6789***************************************************6665157777777776...********************* PP GRAS 95 hltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrle 187 +l Nq+I++a g++++Hi+D++i +G+QWp++l+ +a+R++gpp++RiTg++ p++g +++ eetg+rL+k+++e+gvpf+++v++a+r+e Pahal.C04462.1 404 FLFSNQTIYDASLGKKKIHIVDYGIHYGFQWPCFLRRIACREGGPPEVRITGIDLPQPGfrPTQRAEETGRRLSKYCQEFGVPFRYQVMAASRME 498 **********************************************************9*9****************************99**** PP GRAS 188 dleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseer 282 +++ e+L+++p+E+l+Vn+++q ++l+desv +es+rd L+ +++++P+ +v+ + + +++ F++rf eal yysalfd l+++ pr+s++r Pahal.C04462.1 499 TIRAEDLNLDPEEVLIVNCIYQFQNLMDESVLIESPRDVALNNIRKMRPHAFVHGVVNGSFSAPFFVTRFREALFYYSALFDVLDTTTPRDSSQR 593 *********************************************************************************************** PP GRAS 283 ikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373 + +E+ ++gr++ n++aceg++r+er et+++W+ r ++aG+k++pl+ ++++ ++ ++ ++ + + v+ ++++l++gWk+r L+++S W Pahal.C04462.1 594 MLIEQNIFGRAALNAIACEGTDRVERPETYRQWQVRNQRAGLKQLPLNPNIVQVVRDKVKGCYHKDFVVDIDHHWLLQGWKGRILYAISTW 684 ***************************************************************889************************* PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 62.798 | 286 | 665 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 1.1E-106 | 312 | 684 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 696 aa Download sequence Send to blast |
MASSYDPSLY LSDLGPAYVD LPPTPQQPQC PQPSGGAAAW PEDMVLPFIS RMLMEEDIDD 60 KFFYEYPDHP ALLQAQQPFL DILSDDASSS PSAARSGASV THPSTATSSS DAADALLTPA 120 AVDSYAQFNA FDLDPAAFFS GGANSDLMSS AFLKGMEEAN KFLPSQDKLV IDLDPPDDAK 180 SFVRPAENKL AASGFKFNGA APAAAVAVKV EEAVVSASGG GVGGRGRKNR FDDDEDNLEM 240 DRRSSKQSAL QGDGDDRDVL DKQYMITSHE MCVAVEQMEK LRIPMQEEGG GNGKANAKGG 300 GGRRGGREVV DLRTLLLHCA QAVATDDRRS AIELLKQIKR HASPQGDATQ RLAHCFAEGL 360 QARLAGTGSR MVYQSLMAKR TSVVDILQAY QLYMAAICFK KAAFLFSNQT IYDASLGKKK 420 IHIVDYGIHY GFQWPCFLRR IACREGGPPE VRITGIDLPQ PGFRPTQRAE ETGRRLSKYC 480 QEFGVPFRYQ VMAASRMETI RAEDLNLDPE EVLIVNCIYQ FQNLMDESVL IESPRDVALN 540 NIRKMRPHAF VHGVVNGSFS APFFVTRFRE ALFYYSALFD VLDTTTPRDS SQRMLIEQNI 600 FGRAALNAIA CEGTDRVERP ETYRQWQVRN QRAGLKQLPL NPNIVQVVRD KVKGCYHKDF 660 VVDIDHHWLL QGWKGRILYA ISTWVANDDD AGSYV* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5hyz_A | 5e-44 | 316 | 684 | 8 | 374 | GRAS family transcription factor containing protein, expressed |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025806963.1 | 0.0 | scarecrow-like protein 34 | ||||
TrEMBL | A0A2T8KLP4 | 0.0 | A0A2T8KLP4_9POAL; Uncharacterized protein | ||||
STRING | GRMZM2G159475_P01 | 0.0 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP231 | 31 | 297 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G37650.1 | 1e-154 | GRAS family protein |
Link Out ? help Back to Top | |
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Phytozome | Pahal.C04462.1 |