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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Pahal.C03978.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family |
C2H2 |
Protein Properties |
Length: 523aa MW: 55068.1 Da PI: 8.1143 |
Description |
C2H2 family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Pahal.C03978.1 | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | zf-C2H2 | 16.3 | 2.7e-05 | 103 | 125 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS
zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23
++C++C+k F r nL+ H r H
Pahal.C03978.1 103 FVCEICHKGFQRDQNLQLHRRGH 125
89*******************88 PP
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2 | zf-C2H2 | 12.3 | 0.00051 | 216 | 234 | 5 | 23 |
TTTEEESSHHHHHHHHHHT CS
zf-C2H2 5 dCgksFsrksnLkrHirtH 23
dCg++Fsr++++++H +
Pahal.C03978.1 216 DCGTVFSRRDSFVTHRAFC 234
9**************8765 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 523 aa
Download sequence Send
to blast |
MSGAAARECA GSFSSVSSNN TASREVEEEF LQHQQRQFHI KPLLGSPPEM GTDDGDLQRV 60 TGPSEPPPAA PTVKKKRSLP GTPDPSAEVI ALSPRTLMAT NRFVCEICHK GFQRDQNLQL 120 HRRGHNLPWK LRQRGGGADA AGGGPPRKRV YVCPEASCVH HNPGRALGDL TGIKKHYCRK 180 HGEKKWKCER CAKRYAVHSD WKAHAKVCGT REYKCDCGTV FSRRDSFVTH RAFCDALAQE 240 NNKLAQPMNM ATVASALQGQ AHRLAFPQSH QEADDLDAAE DEDADDFALD TKSPQLRMLP 300 AAMPDDAAAP LLPPLSMAGC MLSSLAAARP APSPSTAFFT GARIGLDGPS DPNRSMGGGF 360 SPAGSATASM SATALLQKAA EMGATTGGGY GAGFATVGFG PMLGGPNHVP TMSPFGPLKA 420 PTMDPPYDGL PLGPAQLVGL DAGRLLPGQL YCGSNGGGAH GGGVGSMTRA IGSLMHGGQQ 480 QQTTEHRRPD DLRVVDYLGV DDQRSFSGGG VSPFGPHIGP WA*
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Functional Description ? help
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Source |
Description |
UniProt | Transcription factor that acts as a positive regulator of gibberellin (GA) action, homeostasis and signaling. GA converts the GAF1 complex from transcriptional activator to repressor via the degradation of DELLA proteins. {ECO:0000269|PubMed:25035403}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | BT066652 | 0.0 | BT066652.1 Zea mays full-length cDNA clone ZM_BFb0043G06 mRNA, complete cds. |