 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Pahal.C03966.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
|
| Family |
TCP |
| Protein Properties |
Length: 161aa MW: 17521.8 Da PI: 11.6624 |
| Description |
TCP family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Pahal.C03966.1 | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | TCP | 53.6 | 8.6e-17 | 47 | 126 | 38 | 105 |
TCP 38 eLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnsssg...............kaaksaa.kskksqksaa 105
eLG+++d++tieWLlqqa+pai ++tgt++ +a+ + s + s ++++ ++ ++++ ++ +++ +
Pahal.C03966.1 47 ELGHKSDGETIEWLLQQAEPAILAATGTGTMPANYS---SLNISIR-PGEPpppltlpaprrsrrsRSTRTTTrRPRAARHARH 126
9***************************88888444...2222222.1111344444444443322111111112222222222 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 161 aa
Download sequence Send
to blast |
MRRHSPVEEV ECRPKLWPGY PISNENPNTP RVPAGCKKVP SEATPHELGH KSDGETIEWL 60
LQQAEPAILA ATGTGTMPAN YSSLNISIRP GEPPPPLTLP APRRSRRSRS TRTTTRRPRA 120
ARHARHDGLP PQPPPATATG PQRRRRQHAE ALQGGPFQGG *
|
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | KJ726951 | 2e-79 | KJ726951.1 Zea mays clone pUT3645 TCP transcription factor (TCP12) mRNA, partial cds. |
