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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Pahal.C03921.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family |
Trihelix |
Protein Properties |
Length: 289aa MW: 31379.5 Da PI: 9.5834 |
Description |
Trihelix family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Pahal.C03921.1 | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | trihelix | 74.7 | 1.6e-23 | 26 | 111 | 1 | 85 |
trihelix 1 rWtkqevlaLiearremeerlrr.gklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdql 85
rWt++e+l+Li+arr me+r + p+W++vs+++r++g+er+p qC+++w nl+++ kki ++e+k + ++ + f ++
Pahal.C03921.1 26 RWTRHETLVLIQARRAMERRGLPlPVRPRPKWAAVSAYCRRHGVERGPMQCRKRWGNLSWDLKKIVAWEGKAGAAPTQLHESFWDM 111
8*******************998345779*****************************************9977666777777777 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 289 aa
Download sequence Send
to blast |
MMSANENSPP VEAAAATSMP RSRLPRWTRH ETLVLIQARR AMERRGLPLP VRPRPKWAAV 60 SAYCRRHGVE RGPMQCRKRW GNLSWDLKKI VAWEGKAGAA PTQLHESFWD MRGDQRRARQ 120 LPSSFDREVY DALLCGTSAA LPDFGDGELD GLCRQPPIMV MPISARKYEP PPASSEHECS 180 GPVTESDKKA GAAASDKNST SQHDGGGGFK DSDATFVAEA EGTTTATPAA TVSIGKQVIE 240 ALERGNRALA QQLEAQKSSW RADREQRAAL LGALDRLAGA VARIADKL*
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Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | KJ728031 | 1e-155 | KJ728031.1 Zea mays clone pUT6171 trihelix transcription factor (THX11) mRNA, complete cds. |