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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pahal.C03908.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | NAC | ||||||||
Protein Properties | Length: 250aa MW: 26496.8 Da PI: 8.846 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 107.9 | 1.2e-33 | 22 | 151 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdL.pkkvkaeekewyfFskrdkkya.tgkrknratksgyWkatgkdkevl 93 lp GfrF+Ptdeel+ +yL++k+ + +l++ +i+++++ +++PwdL p + + e +fF++ +++ +g + ra+ +g+W+ +gk+k v Pahal.C03908.1 22 LPIGFRFRPTDEELLLHYLRRKALACPLPA-GIIPDANLARLHPWDLlPPAGGDADGERFFFHRPATRCWrKGGGAARAAGTGVWRPSGKEKLVA 115 699***************************.99**************5333334455888888877666527999******************** PP NAM 94 sk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 s ++ vg+k+tLvf +gr + +++tdW mheyrl Pahal.C03908.1 116 SPrCKRPVGTKRTLVFCRGRGRGAVRTDWAMHEYRL 151 9877889***************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.19E-45 | 13 | 189 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 42.876 | 22 | 190 | IPR003441 | NAC domain |
Pfam | PF02365 | 9.4E-21 | 23 | 151 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 250 aa Download sequence Send to blast |
MEGRPGGAWR MQGPAGAPVA GLPIGFRFRP TDEELLLHYL RRKALACPLP AGIIPDANLA 60 RLHPWDLLPP AGGDADGERF FFHRPATRCW RKGGGAARAA GTGVWRPSGK EKLVASPRCK 120 RPVGTKRTLV FCRGRGRGAV RTDWAMHEYR LLPAGIHPFH GCAAAGNPTA AHVSCLGAAA 180 DWVVCRIFKR TKPAAHRGRE DDDAEERPSS PSSASSCVTD TAETGDQEHD DDEGSSSSNG 240 GSSCSVASN* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 2e-26 | 22 | 194 | 17 | 169 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 2e-26 | 22 | 194 | 17 | 169 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 2e-26 | 22 | 194 | 17 | 169 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 2e-26 | 22 | 194 | 17 | 169 | NO APICAL MERISTEM PROTEIN |
4dul_A | 2e-26 | 22 | 194 | 17 | 169 | NAC domain-containing protein 19 |
4dul_B | 2e-26 | 22 | 194 | 17 | 169 | NAC domain-containing protein 19 |
Search in ModeBase |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU969970 | 2e-77 | EU969970.1 Zea mays clone 337945 NAC domain-containing protein 68 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025817662.1 | 1e-180 | NAC domain-containing protein 83-like isoform X1 | ||||
TrEMBL | A0A2S3HP12 | 1e-179 | A0A2S3HP12_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Eb03721.1.p | 1e-144 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP8233 | 30 | 47 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G04070.2 | 2e-33 | NAC domain containing protein 47 |
Link Out ? help Back to Top | |
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Phytozome | Pahal.C03908.1 |