PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.C03239.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family GRAS
Protein Properties Length: 386aa    MW: 40579.2 Da    PI: 6.4663
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.C03239.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS156.81.9e-481013824253
            GRAS   4 lLlecAeavssgdlelaqalLarlsel..aspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshl 96 
                     ++ +c+ a+++gd  +++a L+ +s l  as +g+p+qR+a+ f+eAL +r +++ ++l+  l+ + +++   +++ aa++ f  ++P+l+++ l
  Pahal.C03239.1 101 VMQHCVAALDAGDIVAVNADLQAMSYLalASANGEPTQRAAFAFAEALGRRALQTLPGLSWGLQHQLAEQVAPAHADAARRCFDVLCPFLRIAAL 195
                     6779*********************99889**************************************999999999999*************** PP

            GRAS  97 taNqaIleavegeervHiiDfd...isqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvak..rl 186
                     +aNq+I+ a+e e++vH++D++   +  + QW+ Ll+ +a R+eg+p l + +v++    ++  l++t+  L++ A +l+vpf fn++ ++  ++
  Pahal.C03239.1 196 AANQTIVTAMEAEKHVHVVDLGgggAASPDQWLDLLRLFAGRAEGAPVLHLSVVSE----QEALLSRTAGLLSQEAVRLHVPFIFNPVRSRigQF 286
                     *********************733377899**************************....99*************************73333466 PP

            GRAS 187 edleleeLrvkpgEalaVnlvlqlhrll.............................desvsleserdevLklvkslsPkvvvvveqeadhnses 252
                     ++ ++ +L v++gEal++ + lqlhrl                                  +l  + d++L+ + +lsPk+vv++eqeadhn+++
  Pahal.C03239.1 287 SAPDIAALGVHSGEALVITSTLQLHRLIadevsialpagaedhhgnqqgkrkkveqhTAGPHLITRADALLRDLCDLSPKLVVLTEQEADHNGAN 381
                     666999**********************************************998764444555589*************************987 PP

            GRAS 253 F 253
                     +
  Pahal.C03239.1 382 L 382
                     6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098527.76472385IPR005202Transcription factor GRAS
PfamPF035146.5E-46101382IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 386 aa     Download sequence    Send to blast
MSSVNLSNNG KAVVVKEEEV SSPAAIEGAP PTMFLLPVTQ ETHAHHHQAP LDSSGRHAML  60
SKGQGHLGSS VHELGPSSLP PSQPEPATAV VVSRPVGFRA VMQHCVAALD AGDIVAVNAD  120
LQAMSYLALA SANGEPTQRA AFAFAEALGR RALQTLPGLS WGLQHQLAEQ VAPAHADAAR  180
RCFDVLCPFL RIAALAANQT IVTAMEAEKH VHVVDLGGGG AASPDQWLDL LRLFAGRAEG  240
APVLHLSVVS EQEALLSRTA GLLSQEAVRL HVPFIFNPVR SRIGQFSAPD IAALGVHSGE  300
ALVITSTLQL HRLIADEVSI ALPAGAEDHH GNQQGKRKKV EQHTAGPHLI TRADALLRDL  360
CDLSPKLVVL TEQEADHNGA NLVLI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A3e-1310438224259Protein SCARECROW
5b3h_D3e-1310438224259Protein SCARECROW
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025806761.10.0scarecrow-like protein 3
TrEMBLA0A3L6T0580.0A0A3L6T058_PANMI; Uncharacterized protein
STRINGSi024587m1e-178(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP137161330
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50420.12e-37scarecrow-like 3