PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.C03018.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bZIP
Protein Properties Length: 652aa    MW: 68589.6 Da    PI: 7.8687
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.C03018.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_1422e-13177238162
                     XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
          bZIP_1   1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklkse 62 
                     e++ +r+ r+++NRe+A+ sRqRKk ++eeLeekvk++ +   +L ++++ +  e a+l+++
  Pahal.C03018.1 177 EEDKRRTARLMRNRESAQLSRQRKKRYVEELEEKVKSMHSVINDLNSKISFIVAENATLRQQ 238
                     5677899*********************************999******9999999988887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003381.0E-14176241IPR004827Basic-leucine zipper domain
PfamPF001702.1E-11178239IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.071179239IPR004827Basic-leucine zipper domain
SuperFamilySSF579596.25E-12181239No hitNo description
Gene3DG3DSA:1.20.5.1702.6E-16181239No hitNo description
CDDcd147044.06E-20182233No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0042538Biological Processhyperosmotic salinity response
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005783Cellular Componentendoplasmic reticulum
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 652 aa     Download sequence    Send to blast
MAEPALLDHS PFDLRHYPAH LFDPDLPLAG GDLPLGEFAG DDGLDFDLPV DFSVDDFLLR  60
SPDRGGEGDD SGEGSAAGSG PATSSSASPA TSAANSAVAN AGDREVKHED SDEGRSGAAA  120
NWSLKRKQAS PGASSDGAKC RRSGDGELSP SASASASASA SRAAAEDSDE RGAGGEEEDK  180
RRTARLMRNR ESAQLSRQRK KRYVEELEEK VKSMHSVIND LNSKISFIVA ENATLRQQLG  240
GGGVSGPPPG VYPPPPLPGI HFPWVPGYAM RPHGSHVPLV PIPRLKPHQT AAAAKVSKKP  300
EVKKSVENKS KAKTKKVASV SLLGLLFVAL VFGAFVPGFN HSFGMSGRSN DVIFGSFGHS  360
DARVFSVTNH GKGPKGGLNS SDMIDTDPGM AESADGAGQK HHPAHNSSEI LPALLYVPRN  420
GKHVKINGNL IIHSVLASEK AVAHRASNGQ SVKDHKETSV AVARYLSPPR KDTDSKETFP  480
PDAPLPQWFR EGMEGPILNS GMCSEVFQFD ISAASAESGG IIPASPTVNS SSVNATQKIP  540
KPAPAYGGKL KNRRIMYNEA IPLTGKTVNN TEPQAFNSTS ESSKVPDSKP ASSVVVSVLA  600
DPREAGNGDG DPRVSPKPLS RIFVVVLLDG VRYVTYSCTL PFKSVSPHLV N*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1179201KRRTARLMRNRESAQLSRQRKKR
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in endoplasmic reticulum (ER) stress response. Acts as ER stress sensor and activates the transcription factor BZIP50 and the chaperone BIP1. {ECO:0000269|PubMed:22050533, ECO:0000269|PubMed:22084314}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by dithiothreitol- and tunicamycin-induced endoplasmic reticulum (ER) stress response. {ECO:0000269|PubMed:22084314}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0678080.0BT067808.1 Zea mays full-length cDNA clone ZM_BFc0160D20 mRNA, complete cds.
GenBankEU9575450.0EU957545.1 Zea mays clone 1597058 DNA binding protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025807265.10.0bZIP transcription factor 39-like
SwissprotQ6AU900.0BZP39_ORYSJ; bZIP transcription factor 39
TrEMBLA0A2S3HC050.0A0A2S3HC05_9POAL; Uncharacterized protein
STRINGPavir.J00385.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP82283545
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40950.17e-87bZIP family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Cheng CH, et al.
    A fine physical map of the rice chromosome 5.
    Mol. Genet. Genomics, 2005. 274(4): p. 337-45
    [PMID:16261349]
  3. Takahashi H,Kawakatsu T,Wakasa Y,Hayashi S,Takaiwa F
    A rice transmembrane bZIP transcription factor, OsbZIP39, regulates the endoplasmic reticulum stress response.
    Plant Cell Physiol., 2012. 53(1): p. 144-53
    [PMID:22084314]
  4. Ohta M, et al.
    Analysis of rice ER-resident J-proteins reveals diversity and functional differentiation of the ER-resident Hsp70 system in plants.
    J. Exp. Bot., 2013. 64(18): p. 5429-41
    [PMID:24153418]
  5. Cheng Q, et al.
    An alternatively spliced heat shock transcription factor, OsHSFA2dI, functions in the heat stress-induced unfolded protein response in rice.
    Plant Biol (Stuttg), 2015. 17(2): p. 419-29
    [PMID:25255693]