PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pahal.C03018.1

Organism

Panicum hallii

Taxonomic ID

206008

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

bZIP

Protein Properties

Length: 652aa MW: 68589.6 Da PI: 7.8687

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pahal.C03018.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	42	2e-13	177	238	1	62
XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklkse 62 e++ +r+ r+++NRe+A+ sRqRKk ++eeLeekvk++ + +L ++++ + e a+l+++ Pahal.C03018.1 177 EEDKRRTARLMRNRESAQLSRQRKKRYVEELEEKVKSMHSVINDLNSKISFIVAENATLRQQ 238 5677899*******************************999****9999999988887 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	1.0E-14	176	241	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	2.1E-11	178	239	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	10.071	179	239	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	6.25E-12	181	239	No hit	No description
Gene3D	G3DSA:1.20.5.170	2.6E-16	181	239	No hit	No description
CDD	cd14704	4.06E-20	182	233	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0042538	Biological Process	hyperosmotic salinity response
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0005783	Cellular Component	endoplasmic reticulum
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 652 aa Download sequence Send to blast
MAEPALLDHS PFDLRHYPAH LFDPDLPLAG GDLPLGEFAG DDGLDFDLPV DFSVDDFLLR 60 SPDRGGEGDD SGEGSAAGSG PATSSSASPA TSAANSAVAN AGDREVKHED SDEGRSGAAA 120 NWSLKRKQAS PGASSDGAKC RRSGDGELSP SASASASASA SRAAAEDSDE RGAGGEEEDK 180 RRTARLMRNR ESAQLSRQRK KRYVEELEEK VKSMHSVIND LNSKISFIVA ENATLRQQLG 240 GGGVSGPPPG VYPPPPLPGI HFPWVPGYAM RPHGSHVPLV PIPRLKPHQT AAAAKVSKKP 300 EVKKSVENKS KAKTKKVASV SLLGLLFVAL VFGAFVPGFN HSFGMSGRSN DVIFGSFGHS 360 DARVFSVTNH GKGPKGGLNS SDMIDTDPGM AESADGAGQK HHPAHNSSEI LPALLYVPRN 420 GKHVKINGNL IIHSVLASEK AVAHRASNGQ SVKDHKETSV AVARYLSPPR KDTDSKETFP 480 PDAPLPQWFR EGMEGPILNS GMCSEVFQFD ISAASAESGG IIPASPTVNS SSVNATQKIP 540 KPAPAYGGKL KNRRIMYNEA IPLTGKTVNN TEPQAFNSTS ESSKVPDSKP ASSVVVSVLA 600 DPREAGNGDG DPRVSPKPLS RIFVVVLLDG VRYVTYSCTL PFKSVSPHLV N*

Sequence ? help Back to Top

Protein Sequence Length: 652 aa Download sequence Send to blast

MAEPALLDHS PFDLRHYPAH LFDPDLPLAG GDLPLGEFAG DDGLDFDLPV DFSVDDFLLR  60
SPDRGGEGDD SGEGSAAGSG PATSSSASPA TSAANSAVAN AGDREVKHED SDEGRSGAAA  120
NWSLKRKQAS PGASSDGAKC RRSGDGELSP SASASASASA SRAAAEDSDE RGAGGEEEDK  180
RRTARLMRNR ESAQLSRQRK KRYVEELEEK VKSMHSVIND LNSKISFIVA ENATLRQQLG  240
GGGVSGPPPG VYPPPPLPGI HFPWVPGYAM RPHGSHVPLV PIPRLKPHQT AAAAKVSKKP  300
EVKKSVENKS KAKTKKVASV SLLGLLFVAL VFGAFVPGFN HSFGMSGRSN DVIFGSFGHS  360
DARVFSVTNH GKGPKGGLNS SDMIDTDPGM AESADGAGQK HHPAHNSSEI LPALLYVPRN  420
GKHVKINGNL IIHSVLASEK AVAHRASNGQ SVKDHKETSV AVARYLSPPR KDTDSKETFP  480
PDAPLPQWFR EGMEGPILNS GMCSEVFQFD ISAASAESGG IIPASPTVNS SSVNATQKIP  540
KPAPAYGGKL KNRRIMYNEA IPLTGKTVNN TEPQAFNSTS ESSKVPDSKP ASSVVVSVLA  600
DPREAGNGDG DPRVSPKPLS RIFVVVLLDG VRYVTYSCTL PFKSVSPHLV N*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	179	201	KRRTARLMRNRESAQLSRQRKKR

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor involved in endoplasmic reticulum (ER) stress response. Acts as ER stress sensor and activates the transcription factor BZIP50 and the chaperone BIP1. {ECO:0000269\|PubMed:22050533, ECO:0000269\|PubMed:22084314}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by dithiothreitol- and tunicamycin-induced endoplasmic reticulum (ER) stress response. {ECO:0000269\|PubMed:22084314}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT067808	0.0	BT067808.1 Zea mays full-length cDNA clone ZM_BFc0160D20 mRNA, complete cds.
GenBank	EU957545	0.0	EU957545.1 Zea mays clone 1597058 DNA binding protein mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025807265.1	0.0	bZIP transcription factor 39-like
Swissprot	Q6AU90	0.0	BZP39_ORYSJ; bZIP transcription factor 39
TrEMBL	A0A2S3HC05	0.0	A0A2S3HC05_9POAL; Uncharacterized protein
STRING	Pavir.J00385.1.p	0.0	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP8228	35	45

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G40950.1	7e-87	bZIP family protein

Link Out ? help Back to Top
Phytozome	Pahal.C03018.1

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Cheng CH, et al. A fine physical map of the rice chromosome 5. Mol. Genet. Genomics, 2005. 274(4): p. 337-45 [PMID:16261349] Takahashi H,Kawakatsu T,Wakasa Y,Hayashi S,Takaiwa F A rice transmembrane bZIP transcription factor, OsbZIP39, regulates the endoplasmic reticulum stress response. Plant Cell Physiol., 2012. 53(1): p. 144-53 [PMID:22084314] Ohta M, et al. Analysis of rice ER-resident J-proteins reveals diversity and functional differentiation of the ER-resident Hsp70 system in plants. J. Exp. Bot., 2013. 64(18): p. 5429-41 [PMID:24153418] Cheng Q, et al. An alternatively spliced heat shock transcription factor, OsHSFA2dI, functions in the heat stress-induced unfolded protein response in rice. Plant Biol (Stuttg), 2015. 17(2): p. 419-29 [PMID:25255693]