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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
Back to Top |
| TF ID |
Pahal.C02998.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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| Family |
LBD |
| Protein Properties |
Length: 273aa MW: 27580.8 Da PI: 7.4989 |
| Description |
LBD family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Pahal.C02998.1 | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | DUF260 | 138 | 3.3e-43 | 40 | 137 | 1 | 98 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95
+CaaCk+lrrkC++dCv+apyfp ++p+kf vh++FGasnv+k+l++l++ +reda++sl+yeA++r+rdPvyG+vgvi+ lq++l+q+++ela
Pahal.C02998.1 40 PCAACKFLRRKCQPDCVFAPYFPPDNPQKFVHVHRVFGASNVTKILNELHPYQREDAVNSLAYEADMRLRDPVYGCVGVISILQHRLRQVQQELA 134
7*********************************************************************************************9 PP
DUF260 96 llk 98
++
Pahal.C02998.1 135 RAS 137
876 PP
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| Sequence ? help Back to Top |
| Protein Sequence Length: 273 aa
Download sequence Send
to blast |
MAASSASSVP PASAGSVITV ASPSTGGSIS GGAGAGTGSP CAACKFLRRK CQPDCVFAPY 60
FPPDNPQKFV HVHRVFGASN VTKILNELHP YQREDAVNSL AYEADMRLRD PVYGCVGVIS 120
ILQHRLRQVQ QELARASYEL SKYQAAAEAA AASVAVGSNG ATAAGMPDFV GNPVPNCTQN 180
FINGNSTAPA IGGTGFAHPD HFASVQMLAR SYDGEAAAAR LGMNGAGGVY GFGYSSAMGA 240
GHGVVSGLGQ IGSGQFLKPG TAGGDEQPTA AQ*
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| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Promotes the switch from proliferation to differentiation in the embryo sac. Negative regulator of cell proliferation in the adaxial side of leaves. Regulates the formation of a symmetric lamina and the establishment of venation. Interacts directly with RS2 (rough sheath 2) to repress some knox homeobox genes. {ECO:0000269|PubMed:17209126}. |
