PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.C02968.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family ERF
Protein Properties Length: 206aa    MW: 20693 Da    PI: 9.2599
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.C02968.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP249.21.3e-151767155
             AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                    + y+GVr++  +g+Wv+eIr+p +   r r +lg++  +e Aa a++aa+  l+g
  Pahal.C02968.1 17 CPYRGVRRRA-WGKWVSEIRVPGT---RERLWLGSYAAPEAAAVAHDAAACLLRG 67
                    67*****777.**********943...5**********************99987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541711.63E-151871IPR016177DNA-binding domain
PROSITE profilePS5103220.2181880IPR001471AP2/ERF domain
PfamPF008472.5E-81867IPR001471AP2/ERF domain
SMARTSM003806.2E-251886IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.109.2E-251981IPR001471AP2/ERF domain
CDDcd000181.77E-121981No hitNo description
PRINTSPR003678.0E-81930IPR001471AP2/ERF domain
PRINTSPR003678.0E-84157IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 206 aa     Download sequence    Send to blast
MSRAAGGGGG RGAERRCPYR GVRRRAWGKW VSEIRVPGTR ERLWLGSYAA PEAAAVAHDA  60
AACLLRGLPG AAAAGHLNFP ERAACYGGRR GRAPPLSPRS VQRVASDAGM AADAWAALAS  120
SSPLLRNAAG TTAGAAREGE SATGAAAQGA PYAPALPPYS NCSSSGSSTY WCTPSAGGGS  180
GSSSAGSDQQ LVYGDISVDD IEILM*
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025809403.11e-140ethylene-responsive transcription factor ERF021-like
SwissprotQ9C9I82e-28ERF20_ARATH; Ethylene-responsive transcription factor ERF020
TrEMBLA0A2S3HBW81e-139A0A2S3HBW8_9POAL; Uncharacterized protein
STRINGPavir.J32663.1.p4e-71(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP64332951
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71520.18e-14ERF family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]