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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pahal.C02968.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | ERF | ||||||||
Protein Properties | Length: 206aa MW: 20693 Da PI: 9.2599 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 49.2 | 1.3e-15 | 17 | 67 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 + y+GVr++ +g+Wv+eIr+p + r r +lg++ +e Aa a++aa+ l+g Pahal.C02968.1 17 CPYRGVRRRA-WGKWVSEIRVPGT---RERLWLGSYAAPEAAAVAHDAAACLLRG 67 67*****777.**********943...5**********************99987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 1.63E-15 | 18 | 71 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 20.218 | 18 | 80 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 2.5E-8 | 18 | 67 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 6.2E-25 | 18 | 86 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 9.2E-25 | 19 | 81 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.77E-12 | 19 | 81 | No hit | No description |
PRINTS | PR00367 | 8.0E-8 | 19 | 30 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 8.0E-8 | 41 | 57 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 206 aa Download sequence Send to blast |
MSRAAGGGGG RGAERRCPYR GVRRRAWGKW VSEIRVPGTR ERLWLGSYAA PEAAAVAHDA 60 AACLLRGLPG AAAAGHLNFP ERAACYGGRR GRAPPLSPRS VQRVASDAGM AADAWAALAS 120 SSPLLRNAAG TTAGAAREGE SATGAAAQGA PYAPALPPYS NCSSSGSSTY WCTPSAGGGS 180 GSSSAGSDQQ LVYGDISVDD IEILM* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025809403.1 | 1e-140 | ethylene-responsive transcription factor ERF021-like | ||||
Swissprot | Q9C9I8 | 2e-28 | ERF20_ARATH; Ethylene-responsive transcription factor ERF020 | ||||
TrEMBL | A0A2S3HBW8 | 1e-139 | A0A2S3HBW8_9POAL; Uncharacterized protein | ||||
STRING | Pavir.J32663.1.p | 4e-71 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP6433 | 29 | 51 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G71520.1 | 8e-14 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | Pahal.C02968.1 |
Publications ? help Back to Top | |||
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