PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.C02870.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family ERF
Protein Properties Length: 323aa    MW: 32578.2 Da    PI: 6.2652
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.C02870.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.78.2e-20125174255
             AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 
                     +y+GVr+++ +g+W+AeIrdp     +  +r++lg+f tae Aa+a+++a+++++g
  Pahal.C02870.1 125 RYRGVRQRP-WGKWAAEIRDP-----HraARVWLGTFETAEAAARAYDEAALRFRG 174
                     7********.**********7.....338************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541714.25E-22125183IPR016177DNA-binding domain
CDDcd000185.53E-19125184No hitNo description
PROSITE profilePS5103225.686125182IPR001471AP2/ERF domain
SMARTSM003801.1E-35125188IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.2E-32125183IPR001471AP2/ERF domain
PfamPF008478.7E-14125174IPR001471AP2/ERF domain
PRINTSPR003679.7E-12126137IPR001471AP2/ERF domain
PRINTSPR003679.7E-12148164IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 323 aa     Download sequence    Send to blast
MEDGRRSLAG SWAAAEADGD AASAVLSGEY QALEMSAMVS ALAHVVAGGD DDGYPPAAGG  60
YTHAPAQQWG SYSSAAAPTP DHHHFHAAGG GEQGGGGHHH DVRGAAAGPM EEHSPTAAAG  120
GGERRYRGVR QRPWGKWAAE IRDPHRAARV WLGTFETAEA AARAYDEAAL RFRGSRAKLN  180
FPEDARLTAP SSTAAAAAPA AAPAPSATAV AASAAGAYPD ASAVSEYLQY QMLMQGAGGH  240
GGGFPHQYYG GAAAVSSSSG SYSFPASSVT VASVPPSSAP GYGEAAQWAG NSWADGSAWS  300
YPATTGSWSG SGHYPPSTRP PQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A6e-23126182663ATERF1
3gcc_A6e-23126182663ATERF1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025809416.11e-144ethylene-responsive transcription factor ABR1-like
TrEMBLA0A2T7EDC70.0A0A2T7EDC7_9POAL; Uncharacterized protein
STRINGPavir.J02402.1.p1e-107(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1742999
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50080.17e-20ethylene response factor 110