 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Pahal.C02821.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
|
| Family |
NAC |
| Protein Properties |
Length: 259aa MW: 28408.6 Da PI: 5.4933 |
| Description |
NAC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Pahal.C02821.1 | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | NAM | 129.5 | 2.5e-40 | 5 | 136 | 1 | 127 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk.leleevikevdiykvePwdLpk....kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90
l+pGfrF Pt+eelv++yL++k++g + ++e+vi+ +d+ ++Pw+Lp+ ++++ + w++F++r++++a+g r++r+t sgyWka g+
Pahal.C02821.1 5 LAPGFRFYPTEEELVCFYLRNKLDGVRrGDIERVIPVADVSALDPWQLPEahrgAFSGAVEPWFYFCPRQEREARGGRPSRTTPSGYWKAAGTPG 99
579*********************9886677789**************95455555557789********************************* PP
NAM 91 evlskkgelvglkktLvfykgrapkgektdWvmheyr 127
v++++g+ +g+kkt+vfy+grap g kt+W ++ey+
Pahal.C02821.1 100 LVYAADGRPIGTKKTMVFYRGRAPAGAKTKWKLNEYK 136
************************************8 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 259 aa
Download sequence Send
to blast |
MAGDLAPGFR FYPTEEELVC FYLRNKLDGV RRGDIERVIP VADVSALDPW QLPEAHRGAF 60
SGAVEPWFYF CPRQEREARG GRPSRTTPSG YWKAAGTPGL VYAADGRPIG TKKTMVFYRG 120
RAPAGAKTKW KLNEYKALEV EDEDAAGVPA PSHALQTRSE FTLCRLYTQS GCPRQFDRRP 180
SAAAAVGGGS ENPTAAAALA NGEEMGRKRK RAPPSDDDTT SSDGDGSTQQ ILRQRGTDSE 240
GLNDDMAYWS EFLDYDWL*
|
| 3D Structure ? help Back to Top |
 |
| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 1ut4_A | 1e-30 | 5 | 169 | 17 | 165 | NO APICAL MERISTEM PROTEIN |
| 1ut4_B | 1e-30 | 5 | 169 | 17 | 165 | NO APICAL MERISTEM PROTEIN |
| 1ut7_A | 1e-30 | 5 | 169 | 17 | 165 | NO APICAL MERISTEM PROTEIN |
| 1ut7_B | 1e-30 | 5 | 169 | 17 | 165 | NO APICAL MERISTEM PROTEIN |
| 3swm_A | 2e-30 | 5 | 169 | 20 | 168 | NAC domain-containing protein 19 |
| 3swm_B | 2e-30 | 5 | 169 | 20 | 168 | NAC domain-containing protein 19 |
| 3swm_C | 2e-30 | 5 | 169 | 20 | 168 | NAC domain-containing protein 19 |
| 3swm_D | 2e-30 | 5 | 169 | 20 | 168 | NAC domain-containing protein 19 |
| 3swp_A | 2e-30 | 5 | 169 | 20 | 168 | NAC domain-containing protein 19 |
| 3swp_B | 2e-30 | 5 | 169 | 20 | 168 | NAC domain-containing protein 19 |
| 3swp_C | 2e-30 | 5 | 169 | 20 | 168 | NAC domain-containing protein 19 |
| 3swp_D | 2e-30 | 5 | 169 | 20 | 168 | NAC domain-containing protein 19 |
| 4dul_A | 1e-30 | 5 | 169 | 17 | 165 | NAC domain-containing protein 19 |
| 4dul_B | 1e-30 | 5 | 169 | 17 | 165 | NAC domain-containing protein 19 |
| Search in ModeBase |
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | FP099084 | 1e-143 | FP099084.1 Phyllostachys edulis cDNA clone: bphyem111h11, full insert sequence. |
