PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

MYB

Protein Properties

Length: 311aa MW: 33513.6 Da PI: 6.7922

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pahal.C02785.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	22	3.8e-07	36	80	2	44
SSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44 g+WT eE +l+ +a ++ + +W+++a+ ++ gR +++ ++ Pahal.C02785.1 36 GAWTLEENKLFERALARVDWDapdRWERVAALLP-GRMVSDVVAHY 80 79**************99999*******.******999 PP
2	Myb_DNA-binding	45.7	1.5e-14	153	197	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT+eE++l++ + k++G g+W+ I+r + + Rt+ q+ s+ qky Pahal.C02785.1 153 PWTEEEHKLFLMGLKKYGRGDWRNISRNFVTSRTPTQVASHAQKY 197 8*******************************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00717	6.3E-5	34	86	IPR001005	SANT/Myb domain
Pfam	PF00249	8.4E-6	36	80	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	8.97E-10	36	91	IPR009057	Homeodomain-like
PROSITE profile	PS50090	6.144	36	84	IPR017877	Myb-like domain
CDD	cd00167	5.70E-6	37	80	No hit	No description
PROSITE profile	PS51294	17.568	146	202	IPR017930	Myb domain
SuperFamily	SSF46689	1.42E-17	148	202	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	2.9E-17	149	200	IPR006447	Myb domain, plants
Gene3D	G3DSA:1.10.10.60	2.1E-12	150	196	IPR009057	Homeodomain-like
SMART	SM00717	5.8E-13	150	200	IPR001005	SANT/Myb domain
Pfam	PF00249	7.2E-12	153	197	IPR001005	SANT/Myb domain
CDD	cd00167	2.01E-11	153	198	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 311 aa Download sequence Send to blast
MTESWMDVLP PAPAPPYFAG QAAGRFLPDR RAPGPGAWTL EENKLFERAL ARVDWDAPDR 60 WERVAALLPG RMVSDVVAHY DDLENDVCFI EAGLVPFPHY GGGGGAAQSA AGFTFDWDGG 120 DDAAAALGFK RSCYMAGGKR GRGPDQERKK GVPWTEEEHK LFLMGLKKYG RGDWRNISRN 180 FVTSRTPTQV ASHAQKYFIR LNSGGKDKRR SSIHDITTVN LPDDDGGCGG NPSPSPPSVL 240 TAASTPSSTG GPVISEQFGV LVDSKPAPTH HFMPHPYGSV KLEPGNPRHG GFLDDSVLMQ 300 MQCGQLQPLG *

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2cjj_A	4e-15	38	109	11	82	RADIALIS
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Involved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269\|PubMed:11937495, ECO:0000269\|PubMed:9118809}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00296	DAP	Transfer from AT2G38090	Download

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT054281	0.0	BT054281.1 Zea mays full-length cDNA clone ZM_BFb0211P03 mRNA, complete cds.
GenBank	BT055802	0.0	BT055802.1 Zea mays full-length cDNA clone ZM_BFb0203M07 mRNA, complete cds.
GenBank	BT066672	0.0	BT066672.1 Zea mays full-length cDNA clone ZM_BFb0049J12 mRNA, complete cds.
GenBank	HQ858785	0.0	HQ858785.1 Zea mays clone UT1771 MYB transcription factor mRNA, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025804913.1	0.0	transcription factor DIVARICATA-like
Swissprot	Q8S9H7	1e-76	DIV_ANTMA; Transcription factor DIVARICATA
TrEMBL	A0A2S3HBI3	0.0	A0A2S3HBI3_9POAL; Uncharacterized protein
STRING	Si022816m	0.0	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2274	37	96

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G58900.1	2e-71	Homeodomain-like transcriptional regulator

Link Out ? help Back to Top
Phytozome	Pahal.C02785.1

Publications ? help Back to Top
Galego L,Almeida J Role of DIVARICATA in the control of dorsoventral asymmetry in Antirrhinum flowers. Genes Dev., 2002. 16(7): p. 880-91 [PMID:11937495] Almeida J,Rocheta M,Galego L Genetic control of flower shape in Antirrhinum majus. Development, 1997. 124(7): p. 1387-92 [PMID:9118809]