PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.C02764.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family TALE
Protein Properties Length: 568aa    MW: 60889.2 Da    PI: 8.3755
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.C02764.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox32.21.8e-103423791954
                     HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
        Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                     Fe   ++yp+ ++++ LAk++gLt +qV++WF N R +
  Pahal.C02764.1 342 FEHflHPYPTDSDKQMLAKQTGLTRNQVSNWFINARVR 379
                     554458******************************98 PP
2BELL99.72.3e-32209278372
            BELL   3 qelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                     +e q +k++L+sl+e V++rYkqy++qlq vissFe+vagl +a+p++s+Al+++S+hF+cLk +i +q+
  Pahal.C02764.1 209 AEQQWRKTRLISLMEDVCRRYKQYCQQLQSVISSFETVAGLSNAAPFASMALRTMSKHFKCLKGMILNQL 278
                     58899*************************************************************9996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005741.1E-38137276IPR006563POX domain
PfamPF075266.0E-38142274IPR006563POX domain
PROSITE profilePS5007112.487320383IPR001356Homeobox domain
SMARTSM003892.9E-11323387IPR001356Homeobox domain
CDDcd000866.26E-14323384No hitNo description
SuperFamilySSF466894.71E-17325390IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.4E-28326387IPR009057Homeodomain-like
PfamPF059205.0E-19340379IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010051Biological Processxylem and phloem pattern formation
GO:0010076Biological Processmaintenance of floral meristem identity
GO:0010077Biological Processmaintenance of inflorescence meristem identity
GO:0010089Biological Processxylem development
GO:0010154Biological Processfruit development
GO:0010223Biological Processsecondary shoot formation
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0048457Biological Processfloral whorl morphogenesis
GO:0048645Biological Processorgan formation
GO:0080006Biological Processinternode patterning
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 568 aa     Download sequence    Send to blast
MSSAAGGGFG GGGGGDHQHQ HLLLGQAAGQ LYHVPQHSRR EKLRFPPDPA DLAPRAAWPA  60
PPPFYSYASS STSSYSPHSA TLAHTQLVAH ALPAGAGAQI PSQNFALSLS SASSNPPPAP  120
RRQLAAGVAT GPYGPFTGYA AVLGRSRFLG PAQKLLEEIC DVGGRPAQVD RRSDDGLLAM  180
DAMDAAEDVD HDMDGGDRAA AEAVVVSGAE QQWRKTRLIS LMEDVCRRYK QYCQQLQSVI  240
SSFETVAGLS NAAPFASMAL RTMSKHFKCL KGMILNQLRN ISKVAAHDGM GKEDMANFAL  300
MGGGSGLLRG NSANAFSQPH NIWRPQRGLP ERAVSVLRSW LFEHFLHPYP TDSDKQMLAK  360
QTGLTRNQVS NWFINARVRL WKPMVEEIHN LEMRQQHKNP SLDRNQLGMQ QTQHSSDSSG  420
KPSDPSSSQR GQSSGMTTRN LSSPASRHIQ DELSQMPHDM PGQVSFAYNG LSAHHGLALS  480
HAQQAEGVGV GAGGAAANGG VSLTLGLHQN NRTYIAEPLP AALPLNLAHR FGLEDVSEAY  540
VMGSFAGQDR HFTKEIGGHH LVHDFVG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4xrs_A7e-17329386158Homeobox protein Meis1
4xrs_B7e-17329386158Homeobox protein Meis1
5bng_A7e-17329387159Homeobox protein Meis2
5bng_B7e-17329387159Homeobox protein Meis2
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025810296.10.0BEL1-like homeodomain protein 9
TrEMBLA0A2S3HBG80.0A0A2S3HBG8_9POAL; Uncharacterized protein
STRINGPavir.J37847.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP25283881
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G02030.13e-74TALE family protein