PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pahal.C02732.1

Organism

Panicum hallii

Taxonomic ID

206008

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

GRAS

Protein Properties

Length: 647aa MW: 72701.3 Da PI: 6.9493

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pahal.C02732.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	372.3	6.4e-114	275	645	2	374
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshl 96 ++lL++cA+a + +d+++ ++lL+++++++s +gd+ qRla+yf+++L+arla+++s++y+++++++ts + + l+a+ l+ +++P++k+sh Pahal.C02732.1 275 TTLLIHCAQAAAIDDHRNSNELLKQIRKHSSATGDAGQRLAHYFANGLEARLAGTGSTIYRQIAAKRTS---TGDILKAFGLYAKACPFMKISHY 366 689**********************************************************999999...899**************** PP GRAS 97 taNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledl 189 aN++Il+ ++++r+HiiD++i++G+Q+p L+q ++ R +gppslRiTgv+ p++g +e++e+tg+rL+++A+ ++vpfe+++ +a +++++ Pahal.C02732.1 367 FANSTILNVSKSASRLHIIDYGIQYGFQYPVLMQRFSRRHGGPPSLRITGVDFPQPGfrPAERIEATGRRLHEYARMFNVPFEYHA-IAGKWDTI 460 ****************************************************9*************************.799* PP GRAS 190 eleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerik 284 ++e+L+++++E l+Vn+ +++ +++de+v+ +s+r++vL+++++l+P+++v+ + +n++ F++rf ea+ ++s+ fd+lea+++r +e+r Pahal.C02732.1 461 QVEDLNINSDELLVVNCLYRMRNMMDETVTDDSPRTRVLNTIRKLNPHLFVHGVINGTYNAPFFVTRFKEAMFFFSSHFDMLEANASRVDEHRLL 555 ******************************************************************************************* PP GRAS 285 vErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 +Ere++gre+ nv+aceg+er+er et+++W++r +aGF+p+pl+e+++k a++ ++k + + + v+e+++++++gWk+r ++++SaW+ Pahal.C02732.1 556 IEREFVGREALNVIACEGTERIERPETYKQWQMRNFRAGFRPLPLNEEVMKRARYKVSKSYHRDFLVDEDNKWMLQGWKGRVIFALSAWT 645 *********************************************************999***********************6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	66.491	248	625	IPR005202	Transcription factor GRAS
Pfam	PF03514	2.2E-111	275	645	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 647 aa Download sequence Send to blast
MAMDPGSRSD LDFGGVFSTS GPPTGHMINF SLQQQSQVQF FPSYGLRSHN PPVNSHPSRS 60 LVMPGGITPS PASTTTTELD NSEDLSETIT DDAVLAYINQ FLLEDEDDES FPVTSAPVED 120 SALLAIEKPF VDILKSAKPA QAYEVKSWMT GHCDIPGMGG LDDVVIRTQK SCQLPCEMVK 180 EGSVCAVHKG RKNPHDDGLE MEERKSKQSA PCEEETVREM FDKVLLCTDE NCVFRSPLPI 240 DAQISSGYVK GSGNRRGRRK GRSGAGPEEE AVDLTTLLIH CAQAAAIDDH RNSNELLKQI 300 RKHSSATGDA GQRLAHYFAN GLEARLAGTG STIYRQIAAK RTSTGDILKA FGLYAKACPF 360 MKISHYFANS TILNVSKSAS RLHIIDYGIQ YGFQYPVLMQ RFSRRHGGPP SLRITGVDFP 420 QPGFRPAERI EATGRRLHEY ARMFNVPFEY HAIAGKWDTI QVEDLNINSD ELLVVNCLYR 480 MRNMMDETVT DDSPRTRVLN TIRKLNPHLF VHGVINGTYN APFFVTRFKE AMFFFSSHFD 540 MLEANASRVD EHRLLIEREF VGREALNVIA CEGTERIERP ETYKQWQMRN FRAGFRPLPL 600 NEEVMKRARY KVSKSYHRDF LVDEDNKWML QGWKGRVIFA LSAWTS*

Sequence ? help Back to Top

Protein Sequence Length: 647 aa Download sequence Send to blast

MAMDPGSRSD LDFGGVFSTS GPPTGHMINF SLQQQSQVQF FPSYGLRSHN PPVNSHPSRS  60
LVMPGGITPS PASTTTTELD NSEDLSETIT DDAVLAYINQ FLLEDEDDES FPVTSAPVED  120
SALLAIEKPF VDILKSAKPA QAYEVKSWMT GHCDIPGMGG LDDVVIRTQK SCQLPCEMVK  180
EGSVCAVHKG RKNPHDDGLE MEERKSKQSA PCEEETVREM FDKVLLCTDE NCVFRSPLPI  240
DAQISSGYVK GSGNRRGRRK GRSGAGPEEE AVDLTTLLIH CAQAAAIDDH RNSNELLKQI  300
RKHSSATGDA GQRLAHYFAN GLEARLAGTG STIYRQIAAK RTSTGDILKA FGLYAKACPF  360
MKISHYFANS TILNVSKSAS RLHIIDYGIQ YGFQYPVLMQ RFSRRHGGPP SLRITGVDFP  420
QPGFRPAERI EATGRRLHEY ARMFNVPFEY HAIAGKWDTI QVEDLNINSD ELLVVNCLYR  480
MRNMMDETVT DDSPRTRVLN TIRKLNPHLF VHGVINGTYN APFFVTRFKE AMFFFSSHFD  540
MLEANASRVD EHRLLIEREF VGREALNVIA CEGTERIERP ETYKQWQMRN FRAGFRPLPL  600
NEEVMKRARY KVSKSYHRDF LVDEDNKWML QGWKGRVIFA LSAWTS*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5hyz_A	5e-48	278	644	8	374	GRAS family transcription factor containing protein, expressed
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in plant development. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025793343.1	0.0	scarecrow-like protein 9
Refseq	XP_025793344.1	0.0	scarecrow-like protein 9
Refseq	XP_025793345.1	0.0	scarecrow-like protein 9
Refseq	XP_025793346.1	0.0	scarecrow-like protein 9
Swissprot	Q9XE58	1e-165	SCL14_ARATH; Scarecrow-like protein 14
TrEMBL	A0A2S3IGT2	0.0	A0A2S3IGT2_9POAL; Uncharacterized protein
STRING	Pavir.Ia00281.1.p	0.0	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP13841	25	29

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G37650.1	1e-165	GRAS family protein

Link Out ? help Back to Top
Phytozome	Pahal.C02732.1

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]