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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pahal.C02628.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | ERF | ||||||||
Protein Properties | Length: 223aa MW: 23605.1 Da PI: 6.1504 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 58.8 | 1.3e-18 | 61 | 109 | 3 | 55 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 y+GVr+++ +g+WvAeIr+p+ + +r++lg+f t+ +Aa a+++a++++ g Pahal.C02628.2 61 YRGVRQRP-WGKWVAEIREPN----SgRRHWLGTFSTPVDAALAYDRAAEAFLG 109 9*******.**********93....35**********************99877 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 2.09E-21 | 60 | 118 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 3.59E-29 | 60 | 119 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 2.8E-29 | 60 | 118 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 21.193 | 60 | 117 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 9.8E-34 | 60 | 123 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.3E-9 | 61 | 72 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 4.3E-12 | 61 | 109 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.3E-9 | 83 | 99 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 223 aa Download sequence Send to blast |
MGVGPGRKEM GRAAAAPTSR ATGTHQARVN GSANAKPGSG SRRSRSGQRG PGGPDNMRHN 60 YRGVRQRPWG KWVAEIREPN SGRRHWLGTF STPVDAALAY DRAAEAFLGN LAHLNFPADH 120 AAAVTVATAA PAQWQPASCS PAPATTADVF EENEVKPLID VAQGGAGAEV ASQPQQQGAS 180 WLSPEPLLDD DPDDISMYID FDAVDHMMPC YHGIKVEDCQ PD* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 6e-18 | 60 | 117 | 5 | 63 | ATERF1 |
3gcc_A | 6e-18 | 60 | 117 | 5 | 63 | ATERF1 |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025809123.1 | 1e-163 | dehydration-responsive element-binding protein 2D-like | ||||
TrEMBL | A0A2S3HB68 | 1e-162 | A0A2S3HB68_9POAL; Uncharacterized protein | ||||
STRING | Si024427m | 7e-97 | (Setaria italica) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G05410.2 | 3e-17 | DRE-binding protein 2A |
Link Out ? help Back to Top | |
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Phytozome | Pahal.C02628.2 |