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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pahal.C02590.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | WRKY | ||||||||
Protein Properties | Length: 249aa MW: 26996.5 Da PI: 5.4918 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 77.4 | 1.6e-24 | 98 | 157 | 1 | 57 |
---SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--S CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHn 57 +dDgy+WrKYG K++++ ++pr Y+rC+++ gC ++k+v+r ++dp+++++tY geH+ Pahal.C02590.1 98 MDDGYAWRKYGEKSIQDRKNPRFYFRCAYRdelGCGARKQVDRMEDDPSLFHTTYFGEHT 157 59***************************99999*************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 5.1E-24 | 92 | 158 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 23.215 | 93 | 161 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 2.22E-23 | 94 | 160 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.3E-30 | 98 | 162 | IPR003657 | WRKY domain |
Pfam | PF03106 | 5.3E-23 | 99 | 157 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 249 aa Download sequence Send to blast |
MATADRASAA CGVMAEAREA GVRLLALLQA TGADTGKREL AEQIICCIDR ARAAVRAAGE 60 GKTGQGLGLG ARPPAGSKRR SARRCGEARA RVVASSAMDD GYAWRKYGEK SIQDRKNPRF 120 YFRCAYRDEL GCGARKQVDR MEDDPSLFHT TYFGEHTPAC PRDAAVADLD RDGRRFVVQA 180 SIDSFRACLL AEGEEMPASM VEFTAGYCWP LKDQMANLVS SDVSFATPGE LESLDAISME 240 ELLDLLWP* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6ir8_A | 1e-18 | 93 | 157 | 3 | 67 | OsWRKY45 |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025810145.1 | 1e-172 | probable WRKY transcription factor 38 | ||||
TrEMBL | A0A2S3HB44 | 1e-179 | A0A2S3HB44_9POAL; Uncharacterized protein | ||||
STRING | Pavir.J05250.1.p | 1e-149 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP18697 | 6 | 9 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G46400.1 | 7e-19 | WRKY DNA-binding protein 46 |
Link Out ? help Back to Top | |
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Phytozome | Pahal.C02590.1 |