PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.C02587.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family WRKY
Protein Properties Length: 287aa    MW: 31235.9 Da    PI: 4.6583
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.C02587.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY85.26e-27115175158
                     ---SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS CS
            WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnh 58 
                     ++Dg+ WrKYGqKe++gs++pr Y+rCt++   gC+++++v+r++ dp+v+ itY g+H++
  Pahal.C02587.1 115 MEDGFIWRKYGQKEINGSKYPRLYFRCTYKddhGCMARRQVQRAEADPSVFLITYFGDHTC 175
                     58***************************99999*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081122.182110173IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.5E-25110175IPR003657WRKY domain
SuperFamilySSF1182903.14E-24113175IPR003657WRKY domain
SMARTSM007746.0E-38115177IPR003657WRKY domain
PfamPF031061.8E-25116175IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 287 aa     Download sequence    Send to blast
MAMASSAPAC AASELVAKGR ESAAVLQALL VGQHPAAGAV ATPRGLRELT EQILRCCDRA  60
LAALRCGTEE DAAAAAGGTR KRKPERSYSP AAAPATSSKR MRGERGTRVE KGRTMEDGFI  120
WRKYGQKEIN GSKYPRLYFR CTYKDDHGCM ARRQVQRAEA DPSVFLITYF GDHTCCRGDD  180
EPLAPFVINF GSSSSDGQPS RSSPWPSCDD DDPVICKSTD LCNSPEEELR SSMDNECEFI  240
DQSTSVPELT SMSSMDGCLD WTLCDGESPF DIGEFIVQDF DYFGLL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A5e-21113175668OsWRKY45
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7281981e-51KJ728198.1 Zea mays clone pUT6472 WRKY transcription factor (WRKY44) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025809070.10.0probable WRKY transcription factor 70
TrEMBLA0A2S3HB420.0A0A2S3HB42_9POAL; Uncharacterized protein
STRINGPavir.J41073.1.p1e-164(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP46632667
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56400.12e-23WRKY DNA-binding protein 70