PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.C02586.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family WRKY
Protein Properties Length: 302aa    MW: 32438.3 Da    PI: 5.6637
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.C02586.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY826.1e-26115175158
                     ---SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS CS
            WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnh 58 
                     ++Dg+ WrKYGqK+++gs++pr Y+rCt++   gC+++++v+rs+ dp+v  i Y geH++
  Pahal.C02586.1 115 MEDGFVWRKYGQKDIHGSKHPRLYFRCTYKddhGCMARRQVQRSEADPSVYLINYFGEHTC 175
                     58***************************99999*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.1E-24109175IPR003657WRKY domain
PROSITE profilePS5081121.666110173IPR003657WRKY domain
SuperFamilySSF1182901.18E-23112175IPR003657WRKY domain
SMARTSM007744.2E-36115177IPR003657WRKY domain
PfamPF031063.7E-24116175IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 302 aa     Download sequence    Send to blast
MAAMAAPATA ASELVAKGRK SAAFLRSLLG QQPAVGAGAA PHGLQDLAEQ ILRCCDRALA  60
ALRAATEDAA AASSARKRRN PEQGAVSTPA TSSNSKRMRL SGGERATRAE KRRTMEDGFV  120
WRKYGQKDIH GSKHPRLYFR CTYKDDHGCM ARRQVQRSEA DPSVYLINYF GEHTCCRGDD  180
VAESPAPFVI NFGASTRDGQ QLIRGSPWSS SCDEGGGLVV SETSDLCHSP EEKELRAGMG  240
DAAELISEQS TPPPVPELTS MSSPEWHPLD GYLVCDDIGL GESLFDDIGE FAPLDYVGLF  300
Q*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A2e-22113175668OsWRKY45
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025809543.10.0probable WRKY transcription factor 38
TrEMBLA0A2T8KJ570.0A0A2T8KJ57_9POAL; Uncharacterized protein
STRINGPavir.J18239.1.p1e-141(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP46632667
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46400.11e-22WRKY DNA-binding protein 46