PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.C02514.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bZIP
Protein Properties Length: 354aa    MW: 38934.2 Da    PI: 9.2494
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.C02514.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_131.15.2e-1068104541
                     CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
          bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeae 41 
                     k+ rr+++NReAAr+sR+RKka++e+Le+   +L + 
  Pahal.C02514.1  68 KALRRLAQNREAARKSRLRKKAYVEQLENSRLKLAQL 104
                     788*************************954444333 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1707.3E-859110No hitNo description
SMARTSM003384.8E-664127IPR004827Basic-leucine zipper domain
PROSITE profilePS502178.97966110IPR004827Basic-leucine zipper domain
SuperFamilySSF579591.62E-668111No hitNo description
PfamPF001703.8E-768106IPR004827Basic-leucine zipper domain
PROSITE patternPS0003607186IPR004827Basic-leucine zipper domain
PfamPF141444.4E-32150226IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 354 aa     Download sequence    Send to blast
MYRGFRSCNS VQLPICQSIQ LARVSDIELS ARSVPKTLPT QPQLELGQLA SLTASGSGDK  60
SKDKLGQKAL RRLAQNREAA RKSRLRKKAY VEQLENSRLK LAQLEQELQR ARQQGIFIPN  120
PGDKPHSTGE NGALAFDTDY ARWQEDHSKQ INELRGALNS HAGDDDLRRI VDSIMAHYGE  180
AFRLKGVAAK ADAFHVLSGM WKTPVERCFL WLGEFRPSEL LKLLASRLEP LTEQQLASIC  240
SLQQSSQQAE EDLSQGVKAL QQSVAEALAL GSPCPAGSSG NAADCSGQMA VAIGKLGTLE  300
NFLQEADNLR LQTLQQIQSV LTTRQSARAL LAISDYFSRL RALSSLWIAR PRE*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator involved in defense response. {ECO:0000250|UniProtKB:Q7X993}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025807053.10.0transcription factor HBP-1b(c1)-like
SwissprotQ6IVC21e-169TGAL1_ORYSJ; Transcription factor TGAL1
TrEMBLA0A2S3HAW80.0A0A2S3HAW8_9POAL; Uncharacterized protein
STRINGPavir.J05186.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP48638185
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06950.41e-141bZIP family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Chern M, et al.
    Interaction specificity and coexpression of rice NPR1 homologs 1 and 3 (NH1 and NH3), TGA transcription factors and Negative Regulator of Resistance (NRR) proteins.
    BMC Genomics, 2014. 15: p. 461
    [PMID:24919709]