PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Function |

Orthologous Group |

Publication

Basic Information? help Back to Top

TF ID

Pahal.C02514.1

Organism

Panicum hallii

Taxonomic ID

206008

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

bZIP

Protein Properties

Length: 354aa MW: 38934.2 Da PI: 9.2494

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pahal.C02514.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	31.1	5.2e-10	68	104	5	41
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeae 41 k+ rr+++NReAAr+sR+RKka++e+Le+ +L + Pahal.C02514.1 68 KALRRLAQNREAARKSRLRKKAYVEQLENSRLKLAQL 104 788*************************954444333 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	7.3E-8	59	110	No hit	No description
SMART	SM00338	4.8E-6	64	127	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	8.979	66	110	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	1.62E-6	68	111	No hit	No description
Pfam	PF00170	3.8E-7	68	106	IPR004827	Basic-leucine zipper domain
PROSITE pattern	PS00036	0	71	86	IPR004827	Basic-leucine zipper domain
Pfam	PF14144	4.4E-32	150	226	IPR025422	Transcription factor TGA like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 354 aa Download sequence Send to blast
MYRGFRSCNS VQLPICQSIQ LARVSDIELS ARSVPKTLPT QPQLELGQLA SLTASGSGDK 60 SKDKLGQKAL RRLAQNREAA RKSRLRKKAY VEQLENSRLK LAQLEQELQR ARQQGIFIPN 120 PGDKPHSTGE NGALAFDTDY ARWQEDHSKQ INELRGALNS HAGDDDLRRI VDSIMAHYGE 180 AFRLKGVAAK ADAFHVLSGM WKTPVERCFL WLGEFRPSEL LKLLASRLEP LTEQQLASIC 240 SLQQSSQQAE EDLSQGVKAL QQSVAEALAL GSPCPAGSSG NAADCSGQMA VAIGKLGTLE 300 NFLQEADNLR LQTLQQIQSV LTTRQSARAL LAISDYFSRL RALSSLWIAR PRE*

Sequence ? help Back to Top

Protein Sequence Length: 354 aa Download sequence Send to blast

MYRGFRSCNS VQLPICQSIQ LARVSDIELS ARSVPKTLPT QPQLELGQLA SLTASGSGDK  60
SKDKLGQKAL RRLAQNREAA RKSRLRKKAY VEQLENSRLK LAQLEQELQR ARQQGIFIPN  120
PGDKPHSTGE NGALAFDTDY ARWQEDHSKQ INELRGALNS HAGDDDLRRI VDSIMAHYGE  180
AFRLKGVAAK ADAFHVLSGM WKTPVERCFL WLGEFRPSEL LKLLASRLEP LTEQQLASIC  240
SLQQSSQQAE EDLSQGVKAL QQSVAEALAL GSPCPAGSSG NAADCSGQMA VAIGKLGTLE  300
NFLQEADNLR LQTLQQIQSV LTTRQSARAL LAISDYFSRL RALSSLWIAR PRE*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator involved in defense response. {ECO:0000250\|UniProtKB:Q7X993}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025807053.1	0.0	transcription factor HBP-1b(c1)-like
Swissprot	Q6IVC2	1e-169	TGAL1_ORYSJ; Transcription factor TGAL1
TrEMBL	A0A2S3HAW8	0.0	A0A2S3HAW8_9POAL; Uncharacterized protein
STRING	Pavir.J05186.1.p	0.0	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP486	38	185

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06950.4	1e-141	bZIP family protein

Link Out ? help Back to Top
Phytozome	Pahal.C02514.1

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Chern M, et al. Interaction specificity and coexpression of rice NPR1 homologs 1 and 3 (NH1 and NH3), TGA transcription factors and Negative Regulator of Resistance (NRR) proteins. BMC Genomics, 2014. 15: p. 461 [PMID:24919709]