PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

3D Structure |

Gene Ontology |

Orthologous Group |

Basic Information? help Back to Top

TF ID

Pahal.C02498.1

Organism

Panicum hallii

Taxonomic ID

206008

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

NF-YC

Protein Properties

Length: 417aa MW: 44682.8 Da PI: 6.6086

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pahal.C02498.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	51.8	1.8e-16	96	174	20	98
NF-YC 20 elPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivpr 98 ++ rikki++adedv +i+ +Pvl+ska elf+ +l r++ + + +t+ s ++++++ +++dfl ++v + Pahal.C02498.1 96 HFSAPRIKKIMQADEDVGKIALAVPVLVSKALELFLQDLCDRTYDITIRKGVKTVGSSHLKQCIQAYNVYDFLREVVSK 174 56778*********************************************************************99976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	1.5E-21	92	160	IPR009072	Histone-fold
Pfam	PF00808	1.3E-14	101	159	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
SuperFamily	SSF47113	4.0E-18	106	176	IPR009072	Histone-fold

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 417 aa Download sequence Send to blast
MPPNPQSHQD SLFNVSCSSP RDPMSAAALP AASDRNPSPG AHRRGGDFRS WSSLLGRRRR 60 HEEEAGHPLP RLKKLCAGEE ISGTVSGTMR KKLDPHFSAP RIKKIMQADE DVGKIALAVP 120 VLVSKALELF LQDLCDRTYD ITIRKGVKTV GSSHLKQCIQ AYNVYDFLRE VVSKVPDTST 180 SDAIVDDKLG KRRKSEEDGS EEELKRTRND AERHTSNGRG CRRGRGRGRR GGRGAWREAV 240 TTHEQFVENQ SSKPAGLKVE IADEISDVTE AKEATPVSSA RACLRNIDLN LDPVDEDDDG 300 VTVPPQAQSS APATNSAAAN LGLTAPATSS AAANLGLTAP ATSSAAANLG LTAPATSSAA 360 ATAGPSVPRL KEGAKLKEFL GGWELPDMNK MDMDPAQFAL SSNHKLDDDE DYDNEN*

Sequence ? help Back to Top

Protein Sequence Length: 417 aa Download sequence Send to blast

MPPNPQSHQD SLFNVSCSSP RDPMSAAALP AASDRNPSPG AHRRGGDFRS WSSLLGRRRR  60
HEEEAGHPLP RLKKLCAGEE ISGTVSGTMR KKLDPHFSAP RIKKIMQADE DVGKIALAVP  120
VLVSKALELF LQDLCDRTYD ITIRKGVKTV GSSHLKQCIQ AYNVYDFLRE VVSKVPDTST  180
SDAIVDDKLG KRRKSEEDGS EEELKRTRND AERHTSNGRG CRRGRGRGRR GGRGAWREAV  240
TTHEQFVENQ SSKPAGLKVE IADEISDVTE AKEATPVSSA RACLRNIDLN LDPVDEDDDG  300
VTVPPQAQSS APATNSAAAN LGLTAPATSS AAANLGLTAP ATSSAAANLG LTAPATSSAA  360
ATAGPSVPRL KEGAKLKEFL GGWELPDMNK MDMDPAQFAL SSNHKLDDDE DYDNEN*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1jfi_A	1e-18	90	160	5	75	Transcription Regulator NC2 alpha chain
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025807205.1	0.0	uncharacterized protein LOC112885778 isoform X1
TrEMBL	A0A2T7EC65	0.0	A0A2T7EC65_9POAL; Uncharacterized protein
STRING	Pavir.J00079.1.p	1e-175	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2172	36	79

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G12480.1	7e-49	nuclear factor Y, subunit C11

Link Out ? help Back to Top
Phytozome	Pahal.C02498.1