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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Pahal.C02491.1 |
| Organism |
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| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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| Family |
bZIP |
| Protein Properties |
Length: 250aa MW: 26966.1 Da PI: 5.9047 |
| Description |
bZIP family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Pahal.C02491.1 | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | bZIP_1 | 31.9 | 2.8e-10 | 78 | 121 | 8 | 51 |
HCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
bZIP_1 8 rrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkelee 51
rr NReA r++R++Kka + Lee+vk+L a N++L +l+
Pahal.C02491.1 78 RRPLGNREAVRKYREKKKAHAAFLEEEVKKLRAANQQLLRRLQD 121
67778*********************************977654 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 250 aa
Download sequence Send
to blast |
MDDGADLPCQ LLFSHPEVPG SFDELFNSAT TTCTHTHSCN PPGPSGPMHT HTCLHTHTQV 60
FAGGAEDDDA REDPAKPRRP LGNREAVRKY REKKKAHAAF LEEEVKKLRA ANQQLLRRLQ 120
DHAALEAEVV RLRSLLLDVR GKIDAEVSAS PFQKPCSVGS VVSADPAPCF NGNSEVAGAW 180
EESFVPSAAD CRIDEGGGVS REIDVPEGLH HSMDVVANFV SGFCSKEQGM ISGSFNGVRY 240
YSAVCSHLL*
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| Functional Description ? help
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| Source |
Description |
| UniProt | Transcription factor involved in the response to zinc ion deficiency. Binds to the consensus sequence 5'-[AG]TGTCGACA[CT]-3' also called zinc deficiency response element (ZDRE). The ZDRE sequence is conserved in the plant kingdom and present in the promoters of genes that constitute the primary response to zinc deficiency, comprising additional ZIP metal transporter genes (PubMed:20479230, PubMed:26306426). Required for zinc accumulation in roots. Mediates the expression of the zinc transporter ZIP12 during growth in zinc-deficient conditions. ZIP12 transporter is involved in zinc uptake in roots (PubMed:26306426). {ECO:0000269|PubMed:20479230, ECO:0000269|PubMed:26306426}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: Induced by zinc deficiency. {ECO:0000269|PubMed:20479230}. |
| Publications
? help Back to Top |
- Azevedo H, et al.
Transcriptomic profiling of Arabidopsis gene expression in response to varying micronutrient zinc supply.
Genom Data, 2016. 7: p. 256-8
[PMID:26981422] - Castro PH, et al.
Phylogenetic analysis of F-bZIP transcription factors indicates conservation of the zinc deficiency response across land plants.
Sci Rep, 2017. 7(1): p. 3806
[PMID:28630437] - Nazri AZ,Griffin JHC,Peaston KA,Alexander-Webber DGA,Williams LE
F-group bZIPs in barley-a role in Zn deficiency.
Plant Cell Environ., 2017. 40(11): p. 2754-2770
[PMID:28763829] - Ezer D, et al.
The G-Box Transcriptional Regulatory Code in Arabidopsis.
Plant Physiol., 2017. 175(2): p. 628-640
[PMID:28864470]
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