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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Pahal.C02477.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family |
ERF |
Protein Properties |
Length: 196aa MW: 20620.4 Da PI: 10.1063 |
Description |
ERF family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Pahal.C02477.1 | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | AP2 | 58.7 | 1.4e-18 | 44 | 93 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaaiaarkkleg 55
+y+GVr ++ +gr++AeIrd + r +r++lg+++++ eAa a+++a+ +l+g
Pahal.C02477.1 44 HYRGVRKRP-WGRYAAEIRDpW-----RkTRVWLGTYDSPVEAAMAYDRAAVALRG 93
6********.**********88.....45************************998 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0003677 | Molecular Function | DNA binding |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 196 aa
Download sequence Send
to blast |
MQMEWDMRGG VGVGDGGGAR AGGLAVGGVV VGGGDQHQQR VEAHYRGVRK RPWGRYAAEI 60 RDPWRKTRVW LGTYDSPVEA AMAYDRAAVA LRGSKARLNF GGGCGRAREN APVNLPRVPL 120 QARCQLLGGG LDMGRPSPWH VACFPPSMLH QAAAPQAGGL LAADYAASQP STALELRTGP 180 RALPFDLNEP PSNGS*
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Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | BT040420 | 3e-73 | BT040420.1 Zea mays full-length cDNA clone ZM_BFc0090F19 mRNA, complete cds. |
GenBank | EU973503 | 3e-73 | EU973503.1 Zea mays clone 399837 mRNA sequence. |
GenBank | KJ726942 | 3e-73 | KJ726942.1 Zea mays clone pUT3488 AP2-EREBP transcription factor (EREB93) mRNA, partial cds. |