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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pahal.C02477.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | ERF | ||||||||
Protein Properties | Length: 196aa MW: 20620.4 Da PI: 10.1063 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 58.7 | 1.4e-18 | 44 | 93 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr ++ +gr++AeIrd + r +r++lg+++++ eAa a+++a+ +l+g Pahal.C02477.1 44 HYRGVRKRP-WGRYAAEIRDpW-----RkTRVWLGTYDSPVEAAMAYDRAAVALRG 93 6********.**********88.....45************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 4.24E-27 | 43 | 100 | No hit | No description |
PROSITE profile | PS51032 | 21.562 | 44 | 101 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 5.1E-12 | 44 | 93 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 4.45E-21 | 44 | 101 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 4.7E-29 | 44 | 100 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.7E-31 | 44 | 107 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.5E-9 | 45 | 56 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.5E-9 | 67 | 83 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 196 aa Download sequence Send to blast |
MQMEWDMRGG VGVGDGGGAR AGGLAVGGVV VGGGDQHQQR VEAHYRGVRK RPWGRYAAEI 60 RDPWRKTRVW LGTYDSPVEA AMAYDRAAVA LRGSKARLNF GGGCGRAREN APVNLPRVPL 120 QARCQLLGGG LDMGRPSPWH VACFPPSMLH QAAAPQAGGL LAADYAASQP STALELRTGP 180 RALPFDLNEP PSNGS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 6e-20 | 44 | 100 | 5 | 62 | ATERF1 |
3gcc_A | 6e-20 | 44 | 100 | 5 | 62 | ATERF1 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00645 | PBM | Transfer from LOC_Os05g41760 | Download |
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Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT040420 | 3e-73 | BT040420.1 Zea mays full-length cDNA clone ZM_BFc0090F19 mRNA, complete cds. | |||
GenBank | EU973503 | 3e-73 | EU973503.1 Zea mays clone 399837 mRNA sequence. | |||
GenBank | KJ726942 | 3e-73 | KJ726942.1 Zea mays clone pUT3488 AP2-EREBP transcription factor (EREB93) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025809088.1 | 1e-138 | ethylene-responsive transcription factor RAP2-1-like | ||||
TrEMBL | A0A2S3HAU0 | 1e-137 | A0A2S3HAU0_9POAL; Uncharacterized protein | ||||
STRING | Pavir.J36215.1.p | 4e-80 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP103 | 37 | 465 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G28360.1 | 4e-29 | ERF domain protein 12 |
Link Out ? help Back to Top | |
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Phytozome | Pahal.C02477.1 |