![PlantTFDB](images/title_pic.jpg) |
Plant Transcription
Factor Database
|
Transcription Factor Information
Basic
Information? help
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TF ID |
Pahal.C02443.2 |
Organism |
|
Taxonomic ID |
|
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
|
Family |
bHLH |
Protein Properties |
Length: 342aa MW: 36851.1 Da PI: 6.8506 |
Description |
bHLH family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Pahal.C02443.2 | genome | JGI | View CDS |
|
Signature Domain? help Back to Top |
![Signature Domain](draw_signature_domain.php?sp=Pha&pid=Pahal.C02443.2) |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | HLH | 16.6 | 1.4e-05 | 233 | 270 | 12 | 54 |
HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
HLH 12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
R +++ +++ L++l+ + +K + a++L +A+eYI+ L
Pahal.C02443.2 233 RKEKLGDRITALQQLVSPF-----GKTDTASVLHEAIEYIRFL 270
677888999*******998.....8****************98 PP
|
Sequence ? help Back to Top |
Protein Sequence Length: 342 aa
Download sequence Send
to blast |
MADEWWSSAR TGDGASACST NQDADESAAT SATETDYFRP SFHVGAAAAA STPSFLADPA 60 PHMVNWTQAY MSGGRAAGAE ATTGFNALLQ LHGDDAGRYF LLDQQPDVVD GAEPVAPAAA 120 SRSVHLYADN QYSSYGDVPA APMTKPFSQQ QHFSGLFGSS TRNFSDMPSA LPMTTKPLLL 180 QAWEHKAFKS NKEPVQDTCS SATRRSVPEN SPPAAAKKPR IATPSPLPTF KVRKEKLGDR 240 ITALQQLVSP FGKTDTASVL HEAIEYIRFL HHQVASLSSP YLRCGRPVQQ LQQQQIKEGC 300 EAKEDLRSRG LCLVPVASTY AVAASETAPE FWHPTFGGRF R*
|
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | BT069546 | 7e-72 | BT069546.1 Zea mays full-length cDNA clone ZM_BFb0158B10 mRNA, complete cds. |