PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.C02386.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family TCP
Protein Properties Length: 290aa    MW: 30360.2 Da    PI: 8.7295
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.C02386.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP94.32.4e-2955131383
             TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssas 83 
                     g+kdrhsk+ T +g+RdRRvRls+++a++++dLqd+LG+ ++sk ++WLl +a+++i++l+ ++++++ +    + +    
  Pahal.C02386.1  55 GGKDRHSKVRTVKGLRDRRVRLSVPTAIQLYDLQDRLGLSQPSKVVDWLLDAAQHEIDKLPPLQFPPQAQ----DLVAHLP 131
                     78*************************************************************9999822....2222222 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5136929.68856114IPR017887Transcription factor TCP subgroup
PfamPF036341.6E-2656118IPR005333Transcription factor, TCP
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009965Biological Processleaf morphogenesis
GO:0030154Biological Processcell differentiation
GO:0045962Biological Processpositive regulation of development, heterochronic
Sequence ? help Back to Top
Protein Sequence    Length: 290 aa     Download sequence    Send to blast
MISGNLTNEE LAARCTKAEV PAAGAGAKQS PAVPSSRHWP PSTESRIVRV SRVFGGKDRH  60
SKVRTVKGLR DRRVRLSVPT AIQLYDLQDR LGLSQPSKVV DWLLDAAQHE IDKLPPLQFP  120
PQAQDLVAHL PPSMVAPFAN GAADRAAAAA ANAATGASAA MADVDKRHCH GGIKGLMGLN  180
NSVGLVNGAM PLAHGLYYTP GEPWANGNAV HDQVGHGTSP QTVGHHSPFS SLLSLAPGPQ  240
LVFYSPEGGG FAMKEAADHQ FPVDNLDHSQ GQLSLSSSAR SFLHPGSQG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A5e-2061115155Putative transcription factor PCF6
5zkt_B5e-2061115155Putative transcription factor PCF6
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00065PBMTransfer from AT5G60970Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9563580.0EU956358.1 Zea mays clone 1561243 TCP family transcription factor containing protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025810206.10.0transcription factor PCF8-like
RefseqXP_025810207.10.0transcription factor PCF8-like
RefseqXP_025810208.10.0transcription factor PCF8-like
TrEMBLA0A2S3HAL70.0A0A2S3HAL7_9POAL; Uncharacterized protein
STRINGPavir.J35609.1.p1e-170(Panicum virgatum)
STRINGSi022830m1e-170(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP24903584
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60970.14e-41TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 5