PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Orthologous Group |

Basic Information? help Back to Top

TF ID

Pahal.C01971.1

Organism

Panicum hallii

Taxonomic ID

206008

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

Trihelix

Protein Properties

Length: 341aa MW: 36693.2 Da PI: 10.1934

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pahal.C01971.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	47.1	6.2e-15	36	122	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.......rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 +W++ e+ aL+ a ++ +l+rg+l++++W+ev++++ ++r r+ +qCk++ + l+k+yk++++++ s +++f++l+ Pahal.C01971.1 36 CWSDGETAALVSAWGSRYVELNRGNLRQKQWQEVADAVnsrrgasARRRPPRTDVQCKNRVDTLKKKYKAERARNAP------SGWSFFHELD 122 7***************************************999999999********************97......47****98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	1.8E-26	34	124	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 341 aa Download sequence Send to blast
MEVREMAMAA AAAAAVGGGG GKLPPPNPNL PYREDCWSDG ETAALVSAWG SRYVELNRGN 60 LRQKQWQEVA DAVNSRRGAS ARRRPPRTDV QCKNRVDTLK KKYKAERARN APSGWSFFHE 120 LDRLVGPTLS ASASKRPSPS QAPQFALPFP PPALRNHQSS SPSPPPPMAL PLPDYHRGSP 180 LPAAALIQKA AAAAAAAVSD LEDSDDDGGI NNHNSQRSPS HSVSSLSGNG NNKKHSRDEA 240 GSGGDKGFKE LARAIEAFAE MYERVENAKQ KHELEMERQR IEFLKQLEVK RMENFVDAHV 300 KLARAKRPKK TTGGAADGAG AMELVATVAS MPFVSTSTFL *

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025808496.1	0.0	trihelix transcription factor ASIL2-like
TrEMBL	A0A2S3H9T1	0.0	A0A2S3H9T1_9POAL; Uncharacterized protein
STRING	Pavir.J33948.1.p	1e-180	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2065	32	79

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G14180.1	3e-30	sequence-specific DNA binding transcription factors

Link Out ? help Back to Top
Phytozome	Pahal.C01971.1