PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.C01959.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family NAC
Protein Properties Length: 337aa    MW: 36541.2 Da    PI: 9.7193
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.C01959.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM1042e-32632071128
             NAM   1 lppGfrFhPtdeelvveyLkkkvegkk......lelee....vikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknra....... 77 
                     lp+G++F+Ptd+el+ e+L+ k++ ++      +   +    +i+   +i++++P++Lp  v+++    +fF++ +k+y+tg+rk+r+       
  Pahal.C01959.1  63 LPAGVKFDPTDQELL-EHLEGKARPDSrklhplV---DefipTIEGEnGICYTHPERLP-GVSKDGLVRHFFHRPSKAYTTGTRKRRKvhsgdgd 152
                     799************.99****998885665442...133333665557**********.555666688******************85666666 PP

             NAM  78 ...tksgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128
                          + +W++tgk+++vls +g+  g kk+Lv+y   g+++k+ekt+Wvmh+y+l
  Pahal.C01959.1 153 dgvGGETRWHKTGKTRPVLS-HGRPRGYKKILVLYtnYGKQRKPEKTNWVMHQYHL 207
                     66544778************.999***********6657999999*********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019417.59E-3854226IPR003441NAC domain
PROSITE profilePS5100532.48863226IPR003441NAC domain
PfamPF023652.0E-1464207IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 337 aa     Download sequence    Send to blast
MTWCNGFNDV RAAVESSLSP TAAAAVGKKA AASLAVLVKM CPSCGHRAHY EQETTSIQDL  60
PGLPAGVKFD PTDQELLEHL EGKARPDSRK LHPLVDEFIP TIEGENGICY THPERLPGVS  120
KDGLVRHFFH RPSKAYTTGT RKRRKVHSGD GDDGVGGETR WHKTGKTRPV LSHGRPRGYK  180
KILVLYTNYG KQRKPEKTNW VMHQYHLGSD EEERDGELVV SKVFFQTQPR QCGSAAAAKE  240
AVAATNVVTS GNALAGHHQG GSVLRGANGV DPFYNPGTMM GYQGVPNNRA PPAPGASHFM  300
PNFAMHAQGL PLALESRFKN SSGQKIIQDL FSSQAK*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that plays a regulatory role in the development of secondary cell wall fibers (PubMed:18952777,PubMed:22133261). Involved in the regulation of cellulose and hemicellulose biosynthetic genes as well as of genes involved in lignin polymerization and signaling (PubMed:22133261). Is not a direct target of SND1 (PubMed:18952777). {ECO:0000269|PubMed:18952777, ECO:0000269|PubMed:22133261}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0655440.0BT065544.2 Zea mays full-length cDNA clone ZM_BFb0229C22 mRNA, complete cds.
GenBankJX4285320.0JX428532.1 Zea mays subsp. mays clone pUT3132 NAC87 NAC type transcription factor mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004961226.11e-173NAC domain-containing protein 73
SwissprotO494591e-121NAC73_ARATH; NAC domain-containing protein 73
TrEMBLA0A2S3H9R90.0A0A2S3H9R9_9POAL; Uncharacterized protein
STRINGPavir.J04559.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP30753786
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G28500.11e-113NAC domain containing protein 73
Publications ? help Back to Top
  1. Srinivasasainagendra V,Page GP,Mehta T,Coulibaly I,Loraine AE
    CressExpress: a tool for large-scale mining of expression data from Arabidopsis.
    Plant Physiol., 2008. 147(3): p. 1004-16
    [PMID:18467456]
  2. Sakamoto S,Mitsuda N
    Reconstitution of a secondary cell wall in a secondary cell wall-deficient Arabidopsis mutant.
    Plant Cell Physiol., 2015. 56(2): p. 299-310
    [PMID:25535195]
  3. Jervis J, et al.
    A metabolomic assessment of NAC154 transcription factor overexpression in field grown poplar stem wood.
    Phytochemistry, 2015. 115: p. 112-20
    [PMID:25771508]