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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
Back to Top |
TF ID |
Pahal.C01912.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family |
MYB |
Protein Properties |
Length: 253aa MW: 27535 Da PI: 7.7663 |
Description |
MYB family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Pahal.C01912.1 | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | Myb_DNA-binding | 50.7 | 4.2e-16 | 29 | 76 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
+g+WT eEd lv++++ +G g W+ ar g++Rt+k+c++rw++yl
Pahal.C01912.1 29 KGPWTMEEDHVLVNYIAAHGEGAWNNLARAAGLHRTGKSCRLRWLNYL 76
79********************************************97 PP
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2 | Myb_DNA-binding | 54 | 3.7e-17 | 82 | 125 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46
rg++T+eE+el+v++ +++G++ W++Ia++++ gRt++++k++w++
Pahal.C01912.1 82 RGNMTAEEQELIVQLQARWGNK-WSRIAKHLP-GRTDNEVKNFWRT 125
89********************.*********.***********96 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 253 aa
Download sequence Send
to blast |
MQSAMDAGAV VQVQVPVPVP PERAAAMRKG PWTMEEDHVL VNYIAAHGEG AWNNLARAAG 60 LHRTGKSCRL RWLNYLHPHV RRGNMTAEEQ ELIVQLQARW GNKWSRIAKH LPGRTDNEVK 120 NFWRTKIQPK RHRSSDCSSS AMEAIAMAGI CRGMGMAGHR SSTPAITEGQ GSSSHSDRTG 180 VTQDYGIVTQ QPSISSSVAD HLGYGVHGPG GGGAGAMDMD MDFLPEFLAA SGENFWAIDD 240 FWTTMQSFHG NI*
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