PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.C01897.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bZIP
Protein Properties Length: 384aa    MW: 40832.6 Da    PI: 8.2396
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.C01897.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_171.31.4e-22244306163
                     XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
          bZIP_1   1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                     e+elkre+rkq+NRe+ArrsR+RK+ae+eeL++ v++L+aeN++L++e+ +l++ ++kl+ e+
  Pahal.C01897.1 244 ERELKREKRKQSNRESARRSRLRKQAETEELATQVESLTAENTSLRSEIGRLTESSEKLRLEN 306
                     89*********************************************************9887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF077774.9E-28192IPR012900G-box binding protein, multifunctional mosaic region
Gene3DG3DSA:1.20.5.1701.3E-18239303No hitNo description
SMARTSM003386.9E-23244308IPR004827Basic-leucine zipper domain
PfamPF001705.8E-21244306IPR004827Basic-leucine zipper domain
PROSITE profilePS5021713.231246309IPR004827Basic-leucine zipper domain
SuperFamilySSF579591.81E-11247302No hitNo description
CDDcd147029.33E-23249297No hitNo description
PROSITE patternPS000360251266IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 384 aa     Download sequence    Send to blast
MAHDEAVATQ KTGNTTSSPK DQPAPSPYPD WSTMQAYYGP GVLPPTYFAP AIAPGHPPPY  60
MWGPQPLMPH PFGTPYAAMY PHGAAYPHPL VPMVSNPLSV EPTKSANSKE KSSNKKLKEI  120
DQTAVCAGSG NSKRTMSSSE DYSAEGSSDV NDQKVNKTSR KRSSVDGPGA ETSAAARIEG  180
VIAPNHTLAN TAILPHHCFP TPVIKPSTTD VANSRAMGAT ISPSPGVIVP PHTGGPTDLS  240
IKDERELKRE KRKQSNRESA RRSRLRKQAE TEELATQVES LTAENTSLRS EIGRLTESSE  300
KLRLENSALM VKLKDPELPA PAEPSPNKAA ASSTSPRPAA ENFLSMIDST ASAPGVSRHT  360
EHGEPKLRQL LDSNPSTDVA AVS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1260266RRSRLRK
2260267RRSRLRKQ
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025807251.10.0common plant regulatory factor 1-like isoform X1
TrEMBLA0A2S3H9G50.0A0A2S3H9G5_9POAL; Uncharacterized protein
TrEMBLA0A2T7EA650.0A0A2T7EA65_9POAL; Uncharacterized protein
STRINGPavir.J01411.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP27763888
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46270.12e-47G-box binding factor 3