PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pahal.C01882.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | ERF | ||||||||
Protein Properties | Length: 282aa MW: 30281.1 Da PI: 9.4235 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 61.1 | 2.5e-19 | 104 | 154 | 2 | 56 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 y+GVr++ +g+WvAeIr p + r r++lg+++++e Aa a+++a+ kl+ge Pahal.C01882.1 104 LYRGVRQRQ-WGKWVAEIRLPQN---RVRVWLGTYDSPETAAHAYDRAAFKLRGE 154 59****999.**********954...5**************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 2.52E-29 | 103 | 161 | No hit | No description |
SMART | SM00380 | 2.9E-34 | 104 | 167 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.9E-30 | 104 | 161 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 23.169 | 104 | 161 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.16E-22 | 104 | 161 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 1.9E-13 | 105 | 154 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.5E-12 | 105 | 116 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.5E-12 | 143 | 163 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 282 aa Download sequence Send to blast |
MDGSLRTLSP ASFPGEVRSA VSSLLLSSPG TSALDTVFSH LPPPVTIPPL GSSVYYRQCE 60 LLRHFAASQP HAAACSSSSS SSAASFQAPP DDAAAAAAML RQKLYRGVRQ RQWGKWVAEI 120 RLPQNRVRVW LGTYDSPETA AHAYDRAAFK LRGEYARLNF PGVMDGQDCP EHLRQLRAAV 180 DAKIQAIRAR LARKRARARK QREEGKESAR SEGAKPATAT PARPVVSEGA ATTSETTTTS 240 TTPYGSPDGV LSVSAASADG DCPLERLPSF DPELIWEMLN F* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 2e-18 | 101 | 161 | 2 | 63 | ATERF1 |
3gcc_A | 2e-18 | 101 | 161 | 2 | 63 | ATERF1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 191 | 197 | ARKRARA |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025808129.1 | 0.0 | ethylene-responsive transcription factor ERF061 | ||||
TrEMBL | A0A2S3H9F5 | 0.0 | A0A2S3H9F5_9POAL; Uncharacterized protein | ||||
STRING | Pavir.J01332.1.p | 1e-149 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP8828 | 28 | 42 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G39780.1 | 8e-31 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | Pahal.C01882.1 |