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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Pahal.C01779.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family |
WRKY |
Protein Properties |
Length: 323aa MW: 34596.8 Da PI: 5.2826 |
Description |
WRKY family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Pahal.C01779.1 | genome | JGI | View CDS |
|
Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | WRKY | 82 | 6.2e-26 | 159 | 217 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59
D ++WrKYGqK++kgs++pr+YY+C+s C+++k vers p v+++tY eH h
Pahal.C01779.1 159 TDLWAWRKYGQKPIKGSPYPRGYYKCSSLkACMARKLVERSPAKPGVLVVTYIAEHCHA 217
699************************9989*************************996 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 323 aa
Download sequence Send
to blast |
MECSTNDWDL QAVVRSCGTA ACGSDGSSEA APPPPRPEEA RSGIISNVVG RAAAAPEFLV 60 GRPVRPAAAL RELDYLGLDH ELPRAPFSIT PSSERGAALD HEVLISFPAA STSGQQLMQP 120 RKQPGRKPSV RTPRPKRSKK SQMKKVVCEV PVADGGVSTD LWAWRKYGQK PIKGSPYPRG 180 YYKCSSLKAC MARKLVERSP AKPGVLVVTY IAEHCHAVPT MLNALAGTTR HRPASPDGGC 240 QASHGASDEA CGRREEDSAD ASSTAADGGG AETADDENEP PWQLVDMAMD EYPLDDFLAP 300 FDDDFDRLLE DDDGVLERRV SL*
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Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AK111416 | 1e-88 | AK111416.1 Oryza sativa Japonica Group cDNA clone:002-182-G03, full insert sequence. |
GenBank | AY870601 | 1e-88 | AY870601.1 Oryza sativa (japonica cultivar-group) WRKY12 mRNA, complete cds. |