PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pahal.C01283.1

Organism

Panicum hallii

Taxonomic ID

206008

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

M-type_MADS

Protein Properties

Length: 450aa MW: 48315.6 Da PI: 4.1518

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pahal.C01283.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	39.5	7.3e-13	14	50	5	41
SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE- CS SRF-TF 5 nksnrqvtfskRrngilKKAeELSvLCdaevaviifs 41 +k rq +f kRr +++ KA LS+LC++ +avi+++ Pahal.C01283.1 14 EKGVRQASFRKRRGTLFDKARDLSILCQIPAAVIVYG 50 67789*******************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00432	1.8E-13	1	61	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	7.59E-17	5	94	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	13.722	5	50	IPR002100	Transcription factor, MADS-box
CDD	cd00266	2.21E-18	6	86	No hit	No description
Pfam	PF00319	7.1E-11	15	50	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 450 aa Download sequence Send to blast
MPRAGKVKIQ WIMEKGVRQA SFRKRRGTLF DKARDLSILC QIPAAVIVYG GGEAEPQVWP 60 GVQEVTEILR RYRDLPDSLK EARRLDNEGF VRRRTQKMKR KLDNCRASAS RLEVNLILND 120 ISLGRPREFA DLPRELTGAV VSALDALRSV TADRVNFLRS EAAQAAALPQ QLLEEAVAAA 180 LMALQEPPMV PPAVAMAPPM VANAPLLLPA LEPEPPMVPP LAMAPVVADA PLLMPVPEPE 240 PPMVPPLAMA PVLADASLLL PAPEPEQPMV PPLAMAPVLA DVPLDLLLLL LLLPEPEPEP 300 VPPQSELVVA LAPPPQEPPM VADAPLLLPA PEPEPPMMLL DLLLLPEPEP ELVPPQSDEL 360 VVAPAPEPQE PPMVADASLL LPAAGPEPPA TAAGAVVDEP LNLYAEPRDG SFLLEMADAI 420 MDDGSGRQAT AEDVDRLLRE YGLESFKPM*

Sequence ? help Back to Top

Protein Sequence Length: 450 aa Download sequence Send to blast

MPRAGKVKIQ WIMEKGVRQA SFRKRRGTLF DKARDLSILC QIPAAVIVYG GGEAEPQVWP  60
GVQEVTEILR RYRDLPDSLK EARRLDNEGF VRRRTQKMKR KLDNCRASAS RLEVNLILND  120
ISLGRPREFA DLPRELTGAV VSALDALRSV TADRVNFLRS EAAQAAALPQ QLLEEAVAAA  180
LMALQEPPMV PPAVAMAPPM VANAPLLLPA LEPEPPMVPP LAMAPVVADA PLLMPVPEPE  240
PPMVPPLAMA PVLADASLLL PAPEPEQPMV PPLAMAPVLA DVPLDLLLLL LLLPEPEPEP  300
VPPQSELVVA LAPPPQEPPM VADAPLLLPA PEPEPPMMLL DLLLLPEPEP ELVPPQSDEL  360
VVAPAPEPQE PPMVADASLL LPAAGPEPPA TAAGAVVDEP LNLYAEPRDG SFLLEMADAI  420
MDDGSGRQAT AEDVDRLLRE YGLESFKPM*

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021304121.1	7e-64	MADS-box transcription factor 56
TrEMBL	A0A2S3H7Z7	0.0	A0A2S3H7Z7_9POAL; Uncharacterized protein
STRING	Pavir.Ca01242.1.p	1e-156	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP21043	6	7

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G05860.2	6e-16	M-type_MADS family protein

Link Out ? help Back to Top
Phytozome	Pahal.C01283.1