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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Pahal.C01192.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family |
Trihelix |
Protein Properties |
Length: 339aa MW: 37947.2 Da PI: 6.5877 |
Description |
Trihelix family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Pahal.C01192.1 | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | trihelix | 63.4 | 5.3e-20 | 60 | 128 | 1 | 69 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegek 69
+W++ e+ a +++r e+++++ ++k++k+lWe vs++++ +gf r+p qCk+kw+nl +r+k +++ +
Pahal.C01192.1 60 QWSHAETAAFLAVRAELDHSFLTTKRNKALWEFVSARLQGQGFARTPDQCKSKWKNLVTRFKGTEAAAA 128
7*************************************************************9988765 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 339 aa
Download sequence Send
to blast |
MDPFHHLNTS FSNPYHPLLS PSPPHHPHFP PLPPPPPPLP EAAPQQLQSS ASLERERLPQ 60 WSHAETAAFL AVRAELDHSF LTTKRNKALW EFVSARLQGQ GFARTPDQCK SKWKNLVTRF 120 KGTEAAAAAA SGHPAPDADH ASAAAAAQQA RQFPFHDEMR RIFDARVERA QALERKRAKG 180 KDVQKEDDEG GGEGEDDDDE EELEAEMGEE EAGSRVPAEA RGGGGAKKRR RKHAAAAAAA 240 RARTADQGEV EAMLREFMRR QVEMEERWME AAEAREAERR AREEEWRNAM VALGEERLAL 300 VRRWREREEA WRARAEEREE RRHQLVAALL AKLGGGSS*
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Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AK355080 | 1e-70 | AK355080.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv1015K12. |
GenBank | AK375948 | 1e-70 | AK375948.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3110L24. |