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Plant Transcription
Factor Database
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Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Pahal.C01069.4 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
|
| Family |
Dof |
| Protein Properties |
Length: 343aa MW: 34883.2 Da PI: 8.8505 |
| Description |
Dof family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Pahal.C01069.4 | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | zf-Dof | 117.7 | 4.4e-37 | 86 | 144 | 3 | 61 |
zf-Dof 3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61
e lkcprC+stntkfCy+nnyslsqPr+fC+aCrryWt+GGalrnvPvGgg r++ k+
Pahal.C01069.4 86 EPGLKCPRCESTNTKFCYFNNYSLSQPRHFCRACRRYWTRGGALRNVPVGGGYRRHAKR 144
56789************************************************998765 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0009640 | Biological Process | photomorphogenesis |
| GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 343 aa
Download sequence Send
to blast |
MIFPPAFLDS SSWNDNQQHQ HQQQAHHQVA ASGGGGDGNH DLLQPSIMGG ALPEGCPGGG 60
GAGQVGPAKP MSMAERARLA RIPLPEPGLK CPRCESTNTK FCYFNNYSLS QPRHFCRACR 120
RYWTRGGALR NVPVGGGYRR HAKRAKPKAA AAPGSGTAAS AATAALAPAG STSSACTTTN 180
VPALPGPAML GGNLSMLPPL LRLADFDAMS LGSSFSGMGK PSLDAAGGYS VGGGSGPGGL 240
EQWRVQQMQS FPFLHAMDQG PLGPPLAMTM APGMFQLGLD SGDGRGGGGA GGEDGSGELH 300
VMQAKREGGG GYAARGMYGD HHLAAAGYAS YSNNAATGNH LL*
|
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | AC079356 | 1e-113 | AC079356.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone P0016H04, complete sequence. |
| GenBank | AK108933 | 1e-113 | AK108933.1 Oryza sativa Japonica Group cDNA clone:002-153-A09, full insert sequence. |
| GenBank | AP014961 | 1e-113 | AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence. |
| GenBank | GQ183552 | 1e-113 | GQ183552.1 Oryza sativa Japonica Group Dof-type zinc finger protein 25 gene, partial cds. |
