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Plant Transcription
Factor Database
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Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Pahal.C01069.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
|
| Family |
Dof |
| Protein Properties |
Length: 347aa MW: 35395.7 Da PI: 8.8505 |
| Description |
Dof family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Pahal.C01069.1 | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | zf-Dof | 117.7 | 4.5e-37 | 90 | 148 | 3 | 61 |
zf-Dof 3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61
e lkcprC+stntkfCy+nnyslsqPr+fC+aCrryWt+GGalrnvPvGgg r++ k+
Pahal.C01069.1 90 EPGLKCPRCESTNTKFCYFNNYSLSQPRHFCRACRRYWTRGGALRNVPVGGGYRRHAKR 148
56789************************************************998765 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0009640 | Biological Process | photomorphogenesis |
| GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 347 aa
Download sequence Send
to blast |
MIFPPAFLDS SSWNDNQQQQ QQHQHQQQAH HQVAASGGGG DGNHDLLQPS IMGGALPEGC 60
PGGGGAGQVG PAKPMSMAER ARLARIPLPE PGLKCPRCES TNTKFCYFNN YSLSQPRHFC 120
RACRRYWTRG GALRNVPVGG GYRRHAKRAK PKAAAAPGSG TAASAATAAL APAGSTSSAC 180
TTTNVPALPG PAMLGGNLSM LPPLLRLADF DAMSLGSSFS GMGKPSLDAA GGYSVGGGSG 240
PGGLEQWRVQ QMQSFPFLHA MDQGPLGPPL AMTMAPGMFQ LGLDSGDGRG GGGAGGEDGS 300
GELHVMQAKR EGGGGYAARG MYGDHHLAAA GYASYSNNAA TGNHLL*
|
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | AC079356 | 1e-113 | AC079356.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone P0016H04, complete sequence. |
| GenBank | AK108933 | 1e-113 | AK108933.1 Oryza sativa Japonica Group cDNA clone:002-153-A09, full insert sequence. |
| GenBank | AP014961 | 1e-113 | AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence. |
| GenBank | GQ183552 | 1e-113 | GQ183552.1 Oryza sativa Japonica Group Dof-type zinc finger protein 25 gene, partial cds. |
