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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Pahal.C01051.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family |
ERF |
Protein Properties |
Length: 302aa MW: 32084 Da PI: 6.9154 |
Description |
ERF family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Pahal.C01051.1 | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | AP2 | 59.1 | 1.1e-18 | 75 | 125 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
+ ++GVr++ +g+WvAeIr+p + r +r +lg+f ta +Aa+a++aa+++l+g
Pahal.C01051.1 75 CPFRGVRQRT-WGKWVAEIREP---N-RgARLWLGTFATALDAARAYDAAARALYG 125
679****999.**********8...3.35***********************9986 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0005634 | Cellular Component | nucleus |
GO:0003677 | Molecular Function | DNA binding |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 302 aa
Download sequence Send
to blast |
MDVVVQHQQQ RLLPLPPFHQ QGVAVAAGSG GGQQPQPQPQ QHQQKAGGGG RKCCPLRRSR 60 KGCMKGKGGP ENQRCPFRGV RQRTWGKWVA EIREPNRGAR LWLGTFATAL DAARAYDAAA 120 RALYGDCARL NLMPALPQAA AAAAAANNNM VVIKASPAAC PSSPGHQHQY YNYKQEPVMM 180 AAAITHSAPC CSADDASPNS NCSNYSNSSS SAATTPTAAM QQMMADELAA AADLHQQEAE 240 AEDFEDYVTR LPKAEDFGLG GFQEVPPEVF DEAAGGGIWD HTVAWPSSAM MLDSTLQVVP 300 L*
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Functional Description ? help
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Source |
Description |
UniProt | Probable transcriptional activator that binds to the DNA sequence 5'-[AG]CCGAC-3' of the cis-acting dehydration-responsive element (DRE). {ECO:0000250}. |
Regulation -- Description ? help
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Source |
Description |
UniProt | INDUCTION: Not induced by high-salt and drought stresses. {ECO:0000269|PubMed:20049613}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AK108143 | 1e-100 | AK108143.1 Oryza sativa Japonica Group cDNA clone:002-139-E11, full insert sequence. |
GenBank | AP004623 | 1e-100 | AP004623.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, PAC clone:P0705A05. |
GenBank | AP005411 | 1e-100 | AP005411.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, BAC clone:OSJNBa0044E16. |
GenBank | AP014964 | 1e-100 | AP014964.1 Oryza sativa Japonica Group DNA, chromosome 8, cultivar: Nipponbare, complete sequence. |
GenBank | AY339375 | 1e-100 | AY339375.1 Oryza sativa (japonica cultivar-group) Ap22 mRNA, complete cds. |
GenBank | CP012616 | 1e-100 | CP012616.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 8 sequence. |