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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
Back to Top |
| TF ID |
Pahal.C00971.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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| Family |
MIKC_MADS |
| Protein Properties |
Length: 287aa MW: 32245.2 Da PI: 9.8151 |
| Description |
MIKC_MADS family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Pahal.C00971.1 | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | SRF-TF | 99.5 | 1.3e-31 | 62 | 112 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
krien++nrqvtf+kRrng+lKKA+ELSvLCdaeva+i+fss+g+lyeys+
Pahal.C00971.1 62 KRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYSN 112
79***********************************************95 PP
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| 2 | K-box | 97.5 | 2e-32 | 130 | 227 | 4 | 100 |
K-box 4 ssgks.leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkk 97
ss ++e + ++++qe+a+L+++i nLq+++R l+G+++ ++s+k+L+qLe +L+k+l kiR++Kne+l +++e++q++e elq++n +Lr++
Pahal.C00971.1 130 SSAAGtVAEVTIQHYKQESARLRQQITNLQNSNRTLVGDSIATMSHKDLKQLEARLDKGLVKIRARKNEVLSSELEYMQRREMELQNDNLYLRSR 224
44444689999**********************************************************************************99 PP
K-box 98 lee 100
++e
Pahal.C00971.1 225 VDE 227
876 PP
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| Protein Features
? help Back to Top |
 |
| Database |
Entry ID |
E-value |
Start |
End |
InterPro ID |
Description |
| PROSITE profile | PS50066 | 33.221 | 54 | 114 | IPR002100 | Transcription factor, MADS-box |
| SMART | SM00432 | 1.7E-40 | 54 | 113 | IPR002100 | Transcription factor, MADS-box |
| CDD | cd00265 | 2.77E-45 | 55 | 128 | No hit | No description |
| SuperFamily | SSF55455 | 3.4E-33 | 55 | 127 | IPR002100 | Transcription factor, MADS-box |
| PROSITE pattern | PS00350 | 0 | 56 | 110 | IPR002100 | Transcription factor, MADS-box |
| PRINTS | PR00404 | 9.2E-33 | 56 | 76 | IPR002100 | Transcription factor, MADS-box |
| Pfam | PF00319 | 1.2E-26 | 63 | 110 | IPR002100 | Transcription factor, MADS-box |
| PRINTS | PR00404 | 9.2E-33 | 76 | 91 | IPR002100 | Transcription factor, MADS-box |
| PRINTS | PR00404 | 9.2E-33 | 91 | 112 | IPR002100 | Transcription factor, MADS-box |
| PROSITE profile | PS51297 | 14.154 | 141 | 231 | IPR002487 | Transcription factor, K-box |
| Pfam | PF01486 | 1.9E-24 | 141 | 225 | IPR002487 | Transcription factor, K-box |
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0046983 | Molecular Function | protein dimerization activity |
| Sequence ? help Back to Top |
| Protein Sequence Length: 287 aa
Download sequence Send
to blast |
MHIQEVQATP STDIMWGFSG QSTLTSTTGP KLKEPAVSSP GSGSVGAAAA AEKNGRGKIE 60
IKRIENTTNR QVTFCKRRNG LLKKAYELSV LCDAEVALIV FSSRGRLYEY SNNSVKATIE 120
RYKKATSDNS SAAGTVAEVT IQHYKQESAR LRQQITNLQN SNRTLVGDSI ATMSHKDLKQ 180
LEARLDKGLV KIRARKNEVL SSELEYMQRR EMELQNDNLY LRSRVDENER AQQTVNMMGA 240
PSTSEYQQGF IPYDPIRSFL QFNIMQQQPQ FYSQQEDRKD FNVGGR*
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| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Probable transcription factor involved in the development of floral organs. Acts as a C-class protein in association with MADS3. Involved in the control of lodicule number (whorl 2), stamen specification (whorl 3), floral meristem determinacy and regulation of the carpel morphogenesis (whorl 4). Plays a more predominant role in floral meristem determinacy than MADS3. {ECO:0000269|PubMed:16326928}. |
| Publications
? help Back to Top |
- Kikuchi S, et al.
Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
Science, 2003. 301(5631): p. 376-9
[PMID:12869764] - Cheng CH, et al.
A fine physical map of the rice chromosome 5.
Mol. Genet. Genomics, 2005. 274(4): p. 337-45
[PMID:16261349] - Li H, et al.
Rice MADS6 interacts with the floral homeotic genes SUPERWOMAN1, MADS3, MADS58, MADS13, and DROOPING LEAF in specifying floral organ identities and meristem fate.
Plant Cell, 2011. 23(7): p. 2536-52
[PMID:21784949] - Sato H,Yoshida K,Mitsuda N,Ohme-Takagi M,Takamizo T
Male-sterile and cleistogamous phenotypes in tall fescue induced by chimeric repressors of SUPERWOMAN1 and OsMADS58.
Plant Sci., 2012. 183: p. 183-9
[PMID:22195592] - Yun D, et al.
OsMADS16 genetically interacts with OsMADS3 and OsMADS58 in specifying floral patterning in rice.
Mol Plant, 2013. 6(3): p. 743-56
[PMID:23300256] - Yan D, et al.
Curved chimeric palea 1 encoding an EMF1-like protein maintains epigenetic repression of OsMADS58 in rice palea development.
Plant J., 2015. 82(1): p. 12-24
[PMID:25647350] - Zheng M, et al.
DEFORMED FLORAL ORGAN1 (DFO1) regulates floral organ identity by epigenetically repressing the expression of OsMADS58 in rice (Oryza sativa).
New Phytol., 2015. 206(4): p. 1476-90
[PMID:25675970] - Chen R, et al.
A Gene Expression Profiling of Early Rice Stamen Development that Reveals Inhibition of Photosynthetic Genes by OsMADS58.
Mol Plant, 2015. 8(7): p. 1069-89
[PMID:25684654] - Hu Y, et al.
Interactions of OsMADS1 with Floral Homeotic Genes in Rice Flower Development.
Mol Plant, 2015. 8(9): p. 1366-84
[PMID:25917758]
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