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Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Pahal.C00708.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
|
| Family |
ZF-HD |
| Protein Properties |
Length: 317aa MW: 33703.9 Da PI: 9.4338 |
| Description |
ZF-HD family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Pahal.C00708.1 | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | ZF-HD_dimer | 101.7 | 5.1e-32 | 80 | 133 | 3 | 57 |
ZF-HD_dimer 3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrev 57
+vrY+eClkNhAa++Gg a+DGCgEfmp+ geeg+ +al+C+ACgCHRnFHR+e+
Pahal.C00708.1 80 GVRYRECLKNHAAAIGGSATDGCGEFMPA-GEEGSLDALRCSACGCHRNFHRKEP 133
69**************************9.999********************96 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 317 aa
Download sequence Send
to blast |
MDLSGAQGEL PVPMAMHGGG GGSPYLGLHH GHHHEHPQQH SRGPNGRHMS PPDVVVPEEA 60
KNRQLAVVPV GAVGGGGAGG VRYRECLKNH AAAIGGSATD GCGEFMPAGE EGSLDALRCS 120
ACGCHRNFHR KEPPGGDARQ LHGHHPHHHP LSPLAAAHHH HRGLLVAALP PAPTRMVMPL 180
SALQHQAHHS AASAESDDAR AQQPPARKRF RTKFTAEQKA RMLGFAEEAG WRLQKLDDAA 240
VQRFCQEVGV KRRVLKVWMH NNKHTLARRG QEGGHHGGDP EHLGQLGGGM PLPEPGGPGR 300
SPSPSRSPPP QQLRLD*
|
| Functional Description ? help
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| Source |
Description |
| UniProt | Putative transcription factor. {ECO:0000250}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | BT043258 | 1e-164 | BT043258.1 Zea mays full-length cDNA clone ZM_BFc0135C02 mRNA, complete cds. |
| GenBank | BT065005 | 1e-164 | BT065005.1 Zea mays full-length cDNA clone ZM_BFc0120L10 mRNA, complete cds. |
| GenBank | BT065569 | 1e-164 | BT065569.1 Zea mays full-length cDNA clone ZM_BFb0298N18 mRNA, complete cds. |
| GenBank | EU965508 | 1e-164 | EU965508.1 Zea mays clone 286516 mRNA sequence. |
| GenBank | JX428500 | 1e-164 | JX428500.1 Zea mays subsp. mays clone pUT3098 ZHD21 ZF-HD type transcription factor mRNA, partial cds. |
