PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.C00670.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bZIP
Protein Properties Length: 362aa    MW: 39988.2 Da    PI: 9.3573
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.C00670.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_121.35.8e-072272511741
                     HHHHHHHHHHHHHHHHHHHHHHHHH CS
          bZIP_1  17 ArrsRqRKkaeieeLeekvkeLeae 41 
                     A+rsR RK+++i+eLe++v++L++e
  Pahal.C00670.1 227 AQRSRVRKLQYIAELERRVQSLQTE 251
                     89********************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003382.8E-5216275IPR004827Basic-leucine zipper domain
CDDcd147034.01E-14217267No hitNo description
SuperFamilySSF579597.5E-6226269No hitNo description
Gene3DG3DSA:1.20.5.1701.9E-7227269No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 362 aa     Download sequence    Send to blast
MMANGRLQKQ ALLPPRSPFP AAAAAATPAP HAELGPIARP RDAHHRHGHQ RTSSESFLAD  60
EQPSWLDDLL DEPESPARAH GRPGHRRSSS DSFALFEGGG GAAAGMYDIA LDGMRGGGGG  120
QLASWAGAPE FFPEPTSFGR PQGRPWESRQ MYRQGGGMPM PGREKNGGRH GPSSSFGDLE  180
HGHVPNGVDR KGHGDAAHDQ RIGAERKEGL RHSQSEADTK RAKQQYAQRS RVRKLQYIAE  240
LERRVQSLQT EGIEVTAEMD FLGQQNIMLD LENKALKQRL ESLSQEHLIK RYQQEMFERE  300
IGRLRSLFQQ QQQQQQQHVP QQQAPTHSHS SSRDLDSQFA NLSLKHSDPN SGRDAVSGLR  360
I*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025809807.10.0uncharacterized protein At4g06598-like
TrEMBLA0A2S3H6S20.0A0A2S3H6S2_9POAL; Uncharacterized protein
STRINGPavir.J04853.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP33103666
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G58110.24e-63bZIP family protein