PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.C00604.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family NAC
Protein Properties Length: 427aa    MW: 46391.9 Da    PI: 4.5678
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.C00604.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM51.82.6e-1681551127
             NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk.....kvkaeekewyfFskrdkkya....tgkrknr.atksgyWka 85 
                     lppG+ F+P+ ee v +yL++  +g + e++++i +v+iy+  P  L +      +++ + +w   ++  +        + r++r +++ g Wk 
  Pahal.C00604.1   8 LPPGVYFNPSAEECVRDYLRPWNAGVRPETDRIIVDVNIYSDRPDALVRgrepgFLRGFDYKWLMLTHCIRLCGgkgrGKARAKRdVATGGNWKV 102
                     79****************************999**************7445565444455688555555554432221567888877889***** PP

             NAM  86 tgkdkevlsk.kgel.....vglkktLvfy......kgrapkgektdWvmheyr 127
                       k k v ++ +  +      g ++t  fy      kg++  ++kt W+m+e +
  Pahal.C00604.1 103 EQKAKGVAEHaN-GEddppsGGRRRTNGFYlgsgrgKGKKDGSVKTPWLMEELT 155
                     *******99852.223567699********99998888999999*******975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.14E-173178IPR003441NAC domain
PROSITE profilePS5100523.3238182IPR003441NAC domain
PfamPF023651.4E-89154IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 427 aa     Download sequence    Send to blast
MAAPFQPLPP GVYFNPSAEE CVRDYLRPWN AGVRPETDRI IVDVNIYSDR PDALVRGREP  60
GFLRGFDYKW LMLTHCIRLC GGKGRGKARA KRDVATGGNW KVEQKAKGVA EHANGEDDPP  120
SGGRRRTNGF YLGSGRGKGK KDGSVKTPWL MEELTTEEDE ADAAGSWRGE RLVKVFCKLY  180
VSPRAPDEEK LEIFGEDGVP FDRDGKAKTL VVDLPAELFD AFAESVYGAE GPGPAPPPPA  240
PAPCVLGHQQ GQPAAPPLLR QGEEMIHMEK KPRLEYDSPA PQPQGGAGSD RSSCVVQAST  300
SHEQGVVIKL HDDDGGQCGD TDADAKVFQE PEHVAKPSPP QEIPGTATGP PEVAHEACKV  360
AAESMRDHDR DFITDFVDLQ EEQLVNHVPD ILMCGTLNPP SGDEPPLELG FDELLVEDFM  420
KDAPEF*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A3L6SXD61e-156A0A3L6SXD6_PANMI; Uncharacterized protein
STRINGSi011743m1e-112(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP135701724