PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

MYB

Protein Properties

Length: 165aa MW: 18653.4 Da PI: 9.9873

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pahal.C00591.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	51.2	2.9e-16	41	88	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT eEd++lv +++ +G g+W++ ++ + + R++k+c++rw +yl Pahal.C00591.1 41 KGAWTMEEDQRLVAYIRAHGEGSWRSLPKAVSLQRCGKSCRLRWINYL 88 79********************************************97 PP
2	Myb_DNA-binding	56.3	7.5e-18	94	138	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg++T+eEd+++++++ +lG++ W+ Ia +++ gRt++++k++w+++ Pahal.C00591.1 94 RGNFTEEEDDIIIKLHGLLGNK-WSQIAGRLP-GRTDNEIKNYWNTH 138 89******************.*****.**********97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	5.5E-24	32	91	IPR009057	Homeodomain-like
PROSITE profile	PS51294	15.973	36	88	IPR017930	Myb domain
SuperFamily	SSF46689	1.08E-30	40	135	IPR009057	Homeodomain-like
SMART	SM00717	1.7E-10	40	90	IPR001005	SANT/Myb domain
Pfam	PF00249	2.5E-14	41	88	IPR001005	SANT/Myb domain
CDD	cd00167	1.00E-8	43	88	No hit	No description
PROSITE profile	PS51294	28.377	89	143	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	2.4E-28	92	143	IPR009057	Homeodomain-like
SMART	SM00717	5.9E-17	93	141	IPR001005	SANT/Myb domain
Pfam	PF00249	4.1E-16	94	138	IPR001005	SANT/Myb domain
CDD	cd00167	5.42E-12	96	139	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 165 aa Download sequence Send to blast
MRLYPPLLRG MLTSTGLAKC CDRETSDMGR SPCCEKAHTN KGAWTMEEDQ RLVAYIRAHG 60 EGSWRSLPKA VSLQRCGKSC RLRWINYLRP DLKRGNFTEE EDDIIIKLHG LLGNKWSQIA 120 GRLPGRTDNE IKNYWNTHIK RKLLARGIDP QTHRALAASS STCS*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1a5j_A	7e-32	41	143	7	108	B-MYB
1h8a_C	1e-31	40	143	26	128	MYB TRANSFORMING PROTEIN
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. {ECO:0000305}.
UniProt	Transcription factor. {ECO:0000305}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT069656	1e-118	BT069656.1 Zea mays full-length cDNA clone ZM_BFb0205E08 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025807182.1	1e-98	myb-related protein 330-like
Swissprot	P81393	1e-82	MYB08_ANTMA; Myb-related protein 308
Swissprot	P81395	2e-82	MYB30_ANTMA; Myb-related protein 330
TrEMBL	A0A2T8KH86	3e-97	A0A2T8KH86_9POAL; Uncharacterized protein
STRING	Pavir.J00442.1.p	1e-87	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP116	37	448

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38620.1	2e-84	myb domain protein 4

Link Out ? help Back to Top
Phytozome	Pahal.C00591.1

Publications ? help Back to Top
Jackson D,Culianez-Macia F,Prescott AG,Roberts K,Martin C Expression patterns of myb genes from Antirrhinum flowers. Plant Cell, 1991. 3(2): p. 115-25 [PMID:1840903]