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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pahal.C00513.4 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | Trihelix | ||||||||
Protein Properties | Length: 444aa MW: 50306.9 Da PI: 6.9004 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 73.2 | 4.4e-23 | 119 | 214 | 1 | 85 |
trihelix 1 rWtkqevlaLiearremeerlrrgk..........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tsessstcpyfdq 84 +Wt+++v++Li+a ++++e+ + ++ +kk++W+++sk+m +rg+ +sp+qC++k+++lnkryk++++ +++ t++ + + ++ + Pahal.C00513.4 119 KWTDSMVKLLITAASYTGEDPGVDSgggrrncammQKKGKWKAISKVMGQRGCLVSPQQCEDKFNDLNKRYKRLTDLLGRGtTCRIVANPELLGS 213 7****************999998766677778899*******************************************99956777777666666 PP trihelix 85 l 85 + Pahal.C00513.4 214 M 214 5 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13837 | 4.0E-18 | 117 | 241 | No hit | No description |
Sequence ? help Back to Top |
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Protein Sequence Length: 444 aa Download sequence Send to blast |
MEGNNLPSGS LMQGTPYGSL DLHHNHVQMH APNSGNQGFN HPQMASNFPV HLNQVTDSDQ 60 LSEFQFGEHG KANHHHHHQQ QQQQTKNSMS DDEEHGVNED ATDSQTGKGK KGSAWHRMKW 120 TDSMVKLLIT AASYTGEDPG VDSGGGRRNC AMMQKKGKWK AISKVMGQRG CLVSPQQCED 180 KFNDLNKRYK RLTDLLGRGT TCRIVANPEL LGSMTNLSDK TKDDARKILS SKHLFYEEMC 240 SYHNNNRFSL PEDPALQHSL QLALKCKDEH DARRRTSGDA DEGYQSADTD YEEENDDEHP 300 AVHVNKGTLP MHKRMRYMVD QEDVGFGNSS SSHDCSRRSD PHSISVDINK VFPDGTNLAL 360 VQKDLATQSA AIEKQRMEIE AEALDLAKQR HKWERFSKKK DRELEKMRLE NEQMKIENRR 420 LELEVRHKEL DLELRLKGNG SQA* |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU952198 | 0.0 | EU952198.1 Zea mays clone 1220044 hypothetical protein mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025807496.1 | 0.0 | uncharacterized protein LOC112885984 | ||||
TrEMBL | A0A2S3H5Y5 | 0.0 | A0A2S3H5Y5_9POAL; Uncharacterized protein | ||||
STRING | Pavir.J39826.1.p | 0.0 | (Panicum virgatum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G21200.1 | 1e-102 | sequence-specific DNA binding transcription factors |
Link Out ? help Back to Top | |
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Phytozome | Pahal.C00513.4 |