PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Basic Information? help Back to Top

TF ID

Pahal.C00513.4

Organism

Panicum hallii

Taxonomic ID

206008

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

Trihelix

Protein Properties

Length: 444aa MW: 50306.9 Da PI: 6.9004

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pahal.C00513.4	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	73.2	4.4e-23	119	214	1	85
trihelix 1 rWtkqevlaLiearremeerlrrgk..........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tsessstcpyfdq 84 +Wt+++v++Li+a ++++e+ + ++ +kk++W+++sk+m +rg+ +sp+qC++k+++lnkryk++++ +++ t++ + + ++ + Pahal.C00513.4 119 KWTDSMVKLLITAASYTGEDPGVDSgggrrncammQKKGKWKAISKVMGQRGCLVSPQQCEDKFNDLNKRYKRLTDLLGRGtTCRIVANPELLGS 213 7**************999998766677778899*****************************************99956777777666666 PP trihelix 85 l 85 + Pahal.C00513.4 214 M 214 5 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	4.0E-18	117	241	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 444 aa Download sequence Send to blast
MEGNNLPSGS LMQGTPYGSL DLHHNHVQMH APNSGNQGFN HPQMASNFPV HLNQVTDSDQ 60 LSEFQFGEHG KANHHHHHQQ QQQQTKNSMS DDEEHGVNED ATDSQTGKGK KGSAWHRMKW 120 TDSMVKLLIT AASYTGEDPG VDSGGGRRNC AMMQKKGKWK AISKVMGQRG CLVSPQQCED 180 KFNDLNKRYK RLTDLLGRGT TCRIVANPEL LGSMTNLSDK TKDDARKILS SKHLFYEEMC 240 SYHNNNRFSL PEDPALQHSL QLALKCKDEH DARRRTSGDA DEGYQSADTD YEEENDDEHP 300 AVHVNKGTLP MHKRMRYMVD QEDVGFGNSS SSHDCSRRSD PHSISVDINK VFPDGTNLAL 360 VQKDLATQSA AIEKQRMEIE AEALDLAKQR HKWERFSKKK DRELEKMRLE NEQMKIENRR 420 LELEVRHKEL DLELRLKGNG SQA*

Sequence ? help Back to Top

Protein Sequence Length: 444 aa Download sequence Send to blast

MEGNNLPSGS LMQGTPYGSL DLHHNHVQMH APNSGNQGFN HPQMASNFPV HLNQVTDSDQ  60
LSEFQFGEHG KANHHHHHQQ QQQQTKNSMS DDEEHGVNED ATDSQTGKGK KGSAWHRMKW  120
TDSMVKLLIT AASYTGEDPG VDSGGGRRNC AMMQKKGKWK AISKVMGQRG CLVSPQQCED  180
KFNDLNKRYK RLTDLLGRGT TCRIVANPEL LGSMTNLSDK TKDDARKILS SKHLFYEEMC  240
SYHNNNRFSL PEDPALQHSL QLALKCKDEH DARRRTSGDA DEGYQSADTD YEEENDDEHP  300
AVHVNKGTLP MHKRMRYMVD QEDVGFGNSS SSHDCSRRSD PHSISVDINK VFPDGTNLAL  360
VQKDLATQSA AIEKQRMEIE AEALDLAKQR HKWERFSKKK DRELEKMRLE NEQMKIENRR  420
LELEVRHKEL DLELRLKGNG SQA*

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EU952198	0.0	EU952198.1 Zea mays clone 1220044 hypothetical protein mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025807496.1	0.0	uncharacterized protein LOC112885984
TrEMBL	A0A2S3H5Y5	0.0	A0A2S3H5Y5_9POAL; Uncharacterized protein
STRING	Pavir.J39826.1.p	0.0	(Panicum virgatum)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G21200.1	1e-102	sequence-specific DNA binding transcription factors

Link Out ? help Back to Top
Phytozome	Pahal.C00513.4