PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.C00513.4
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family Trihelix
Protein Properties Length: 444aa    MW: 50306.9 Da    PI: 6.9004
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.C00513.4genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix73.24.4e-23119214185
        trihelix   1 rWtkqevlaLiearremeerlrrgk..........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tsessstcpyfdq 84 
                     +Wt+++v++Li+a ++++e+ + ++          +kk++W+++sk+m +rg+ +sp+qC++k+++lnkryk++++  +++ t++ + +  ++ +
  Pahal.C00513.4 119 KWTDSMVKLLITAASYTGEDPGVDSgggrrncammQKKGKWKAISKVMGQRGCLVSPQQCEDKFNDLNKRYKRLTDLLGRGtTCRIVANPELLGS 213
                     7****************999998766677778899*******************************************99956777777666666 PP

        trihelix  85 l 85 
                     +
  Pahal.C00513.4 214 M 214
                     5 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138374.0E-18117241No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 444 aa     Download sequence    Send to blast
MEGNNLPSGS LMQGTPYGSL DLHHNHVQMH APNSGNQGFN HPQMASNFPV HLNQVTDSDQ  60
LSEFQFGEHG KANHHHHHQQ QQQQTKNSMS DDEEHGVNED ATDSQTGKGK KGSAWHRMKW  120
TDSMVKLLIT AASYTGEDPG VDSGGGRRNC AMMQKKGKWK AISKVMGQRG CLVSPQQCED  180
KFNDLNKRYK RLTDLLGRGT TCRIVANPEL LGSMTNLSDK TKDDARKILS SKHLFYEEMC  240
SYHNNNRFSL PEDPALQHSL QLALKCKDEH DARRRTSGDA DEGYQSADTD YEEENDDEHP  300
AVHVNKGTLP MHKRMRYMVD QEDVGFGNSS SSHDCSRRSD PHSISVDINK VFPDGTNLAL  360
VQKDLATQSA AIEKQRMEIE AEALDLAKQR HKWERFSKKK DRELEKMRLE NEQMKIENRR  420
LELEVRHKEL DLELRLKGNG SQA*
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9521980.0EU952198.1 Zea mays clone 1220044 hypothetical protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025807496.10.0uncharacterized protein LOC112885984
TrEMBLA0A2S3H5Y50.0A0A2S3H5Y5_9POAL; Uncharacterized protein
STRINGPavir.J39826.1.p0.0(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G21200.11e-102sequence-specific DNA binding transcription factors