PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.C00506.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family GRAS
Protein Properties Length: 507aa    MW: 55007.7 Da    PI: 4.4387
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.C00506.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS193.61.2e-591365032373
            GRAS   2 velLlecAeavssgdlelaqalLarlsel.........aspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsev 87 
                      +lL++ A+av+++d   a+a+L+rl +l            ++++   la yf+++L++r+++   e+  a +p        ++++ a+++++e+
  Pahal.C00506.1 136 SDLLVAGARAVEAQDSISASAILSRLDDLipgvpcrscHHAAASSSDHLACYFARGLRSRISGARAECHLAAAPA------PENRMPAYRMLQEL 224
                     679************************99776655321122336999****************555555444433......456999******** PP

            GRAS  88 sPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg....skeeleetgerLakfAeelgvpfef 178
                     sP++kf+h+t NqaIlea++ ++ vH++D+++++G+QW++L+  La   ++p  + +T+v+  + +     + +  + ++ L++fA +l++pf++
  Pahal.C00506.1 225 SPFIKFAHFTGNQAILEATADDTGVHVVDLNVGEGVQWASLMSDLARHGGKP--FHLTAVVTTDDDadsaAAGSHPAAARWLSEFAGSLNLPFRY 317
                     **********************************************765554..567888776655666566667788889************** PP

            GRAS 179 nvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqe...adhnsesFlerflealeyysalfds 270
                     + l+ ++ edl+  + + + g +++V++    ++      sl   + ++L  vk l+Pk+v+++eqe   +d++ ++F+e f+e l++++a ++s
  Pahal.C00506.1 318 SSLHLRSEEDLRGFTTSGDGGGSVIVSCDTTDKSYS----SLIRLQMQLLGSVKILRPKLVILIEQEpfrIDRSLAPFAEFFCEVLRHFAATLES 408
                     ***99999999999999999********99554443....4444556********************988899999******************* PP

            GRAS 271 leaklpres..eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWk 363
                     le+ +           vE+e lg+ i+++v + +              +  e  GF++ +ls+++++q k+l   ++ +g+ v +e+g l l+W+
  Pahal.C00506.1 409 LESCFRDGGygACLGPVEKETLGPTIEDAVRQYEPL----AG-----GAGAELEGFRARELSSFNVAQGKMLAGLFS-RGFGVVQEEGRLALCWN 493
                     ****977767777889**************988776....22.....3456889**********************9.***************** PP

            GRAS 364 drpLvsvSaW 373
                     +rpL+svS+W
  Pahal.C00506.1 494 SRPLTSVSVW 503
                     ********** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098529.288109485IPR005202Transcription factor GRAS
PfamPF035144.2E-57136503IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 507 aa     Download sequence    Send to blast
MPNRGSELYE TTGSSRQFVL SEDIIQMETM SYPCSPLIPF PTQHEESSYL LWSPQVVIPL  60
ENGNMCNGDA DPSPDQQQQD HEFMDIMIQE ANRLLLQDDL SNGDPLLSGF DQRLEGQENG  120
SLLAVQEEFM EESSLSDLLV AGARAVEAQD SISASAILSR LDDLIPGVPC RSCHHAAASS  180
SDHLACYFAR GLRSRISGAR AECHLAAAPA PENRMPAYRM LQELSPFIKF AHFTGNQAIL  240
EATADDTGVH VVDLNVGEGV QWASLMSDLA RHGGKPFHLT AVVTTDDDAD SAAAGSHPAA  300
ARWLSEFAGS LNLPFRYSSL HLRSEEDLRG FTTSGDGGGS VIVSCDTTDK SYSSLIRLQM  360
QLLGSVKILR PKLVILIEQE PFRIDRSLAP FAEFFCEVLR HFAATLESLE SCFRDGGYGA  420
CLGPVEKETL GPTIEDAVRQ YEPLAGGAGA ELEGFRAREL SSFNVAQGKM LAGLFSRGFG  480
VVQEEGRLAL CWNSRPLTSV SVWSPV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A2e-2217950553379Protein SCARECROW
5b3h_D2e-2217950553379Protein SCARECROW
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025809511.10.0nodulation-signaling pathway 2 protein-like isoform X2
TrEMBLA0A2S3H6390.0A0A2S3H639_9POAL; Uncharacterized protein
STRINGPavir.Cb01937.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP76843250
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G08250.12e-27GRAS family protein