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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Pahal.C00478.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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| Family |
E2F/DP |
| Protein Properties |
Length: 447aa MW: 48347.3 Da PI: 4.458 |
| Description |
E2F/DP family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Pahal.C00478.1 | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | E2F_TDP | 83.3 | 2e-26 | 131 | 196 | 1 | 71 |
E2F_TDP 1 rkeksLrlltqkflkllekseegivtlnevakeLvsedvknkrRRiYDilNVLealnliekkekneirwkg 71
r+++sL+llt+kfl+ll+ ++ giv+ln++a++L +v ++RRiYDi+NVLe+++liekk kn+irwkg
Pahal.C00478.1 131 RYDSSLGLLTKKFLNLLKGAPGGIVDLNNAAETL---EV--QKRRIYDITNVLEGIGLIEKKLKNNIRWKG 196
6899******************************...99..****************************98 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0005667 | Cellular Component | transcription factor complex |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 447 aa
Download sequence Send
to blast |
MAAAAAGGGA GEAGARALLQ RHQPFAPPPG EYHNFGAPAA GGDEMVEAVV LRTPLKRKQN 60
REGNGAAEPT DWMMSPGYAN AGSSPVPTPP SGKGLKSSAK PKATKGQKPC PQTPLSFGSP 120
GNPSTPVGGC RYDSSLGLLT KKFLNLLKGA PGGIVDLNNA AETLEVQKRR IYDITNVLEG 180
IGLIEKKLKN NIRWKGIDDS RPGEVSDDMS ILQADIEALT VQEQNLDERI NEMRDRLREL 240
TEDENNQKWL YVTEDDIKSL PCFQNQTLIA IKAPHGTTLE VPDPDEVNDY PQRRYRIVLR 300
STMGPIDVYL VSQFEEMSGM ETPPRPTPTI SMDSLENPRT PLAAECSKAA GTEPTIQQGF 360
TLPPDAPSSS QDIGGMMKIV PSELDTDADY WLLSDTGVSI TDMWKTAPDV EWDGIEKFNA 420
EDFLEVSTPR QQDKPADVVD GPSCMS*
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| Functional Description ? help
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| Source |
Description |
| UniProt | Transcription activator that binds DNA cooperatively with DP proteins through the E2 recognition site, 5'-TTTC[CG]CGC-3' found in the promoter region of a number of genes whose products are involved in cell cycle regulation or in DNA replication. The binding of retinoblastoma-related proteins represses transactivation. Regulates gene expression both positively and negatively. Activates the expression of E2FB. Involved in the control of cell-cycle progression from G1 to S phase. Stimulates cell proliferation and delays differentiation. {ECO:0000269|PubMed:11669580, ECO:0000269|PubMed:11786543, ECO:0000269|PubMed:11862494, ECO:0000269|PubMed:11889041, ECO:0000269|PubMed:11891240, ECO:0000269|PubMed:12913157, ECO:0000269|PubMed:15377755, ECO:0000269|PubMed:16514015, ECO:0000269|PubMed:19662336}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | BT034349 | 0.0 | BT034349.1 Zea mays full-length cDNA clone ZM_BFc0009D23 mRNA, complete cds. |
| GenBank | BT064435 | 0.0 | BT064435.1 Zea mays full-length cDNA clone ZM_BFc0168K16 mRNA, complete cds. |
| GenBank | EU973980 | 0.0 | EU973980.1 Zea mays clone 425487 transcription factor E2F2 mRNA, complete cds. |
| GenBank | JX469970 | 0.0 | JX469970.1 Zea mays subsp. mays clone UT3233 E2F-DP-type transcription factor mRNA, partial cds. |
