PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.C00362.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family GRAS
Protein Properties Length: 401aa    MW: 43528.4 Da    PI: 6.4511
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.C00362.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS246.41.1e-752336979374
            GRAS  79 aalklfsevsPilkfshltaNqaIleavegeervHiiDfd..isqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAee 171
                     aa++ f+e+sP++k +  + N+ Ilea+e+e+ vH+iD+   + q+ QW+ Ll+++ sRpeg p+lR+T v++    +     e   +L++ A+e
  Pahal.C00362.1  23 AARRSFFELSPFPKAAVAVGNRVILEAMENEKNVHVIDLAgpAAQPSQWIQLLREFHSRPEGEPHLRLTIVHD----DG----EFLAKLTDEADE 109
                     67889**********************************65589*****************************....44....55679******* PP

            GRAS 172 lgvpfefnvlvakrledleleeL....rvkpgEalaVnlvlqlhrll................................................ 214
                     l+vpf+ +  va ++e+l+l++L     +k+gEa a+ +  +lhrll                                                
  Pahal.C00362.1 110 LDVPFQVHC-VAGQIETLDLNDLhgvlGLKSGEARAIVCTTRLHRLLaaaddaassslgaghhfnqmatiarlqqmasgscppsirgaacegdes 203
                     *********.7999*****999966667889*************************************************************888 PP

            GRAS 215 ...desvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpres...eerikvErellgreivnvvacega 303
                          ++ ++ +   +L++ +  sPkvvv++eqea hn+ sF +rf+eal+yy+a +dsl+a +++      er+ vEr++lg+ei++v+  ega
  Pahal.C00362.1 204 yssPATLWMPPALAGFLSAARAASPKVVVLAEQEAGHNGVSFRKRFAEALSYYAAAYDSLDAAAAAYRrpaAERAEVERAVLGEEIRDVLLREGA 298
                     755444555558999*********************************************777554434559*********************** PP

            GRAS 304 errerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                     +rrerh +l++W  r+e aGF++vpls+ a       lr++++ g +  e+ g+l+l+W++ pL svSaWr
  Pahal.C00362.1 299 RRRERHDRLHQWPLRMEVAGFRSVPLSYAALRLGVDTLRRCGVGGCESREHGGCLLLCWRSWPLCSVSAWR 369
                     **********************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098534.4371349IPR005202Transcription factor GRAS
PfamPF035143.8E-7323369IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 401 aa     Download sequence    Send to blast
MVPAVAGALI DPSDHLDRRC VRAARRSFFE LSPFPKAAVA VGNRVILEAM ENEKNVHVID  60
LAGPAAQPSQ WIQLLREFHS RPEGEPHLRL TIVHDDGEFL AKLTDEADEL DVPFQVHCVA  120
GQIETLDLND LHGVLGLKSG EARAIVCTTR LHRLLAAADD AASSSLGAGH HFNQMATIAR  180
LQQMASGSCP PSIRGAACEG DESYSSPATL WMPPALAGFL SAARAASPKV VVLAEQEAGH  240
NGVSFRKRFA EALSYYAAAY DSLDAAAAAY RRPAAERAEV ERAVLGEEIR DVLLREGARR  300
RERHDRLHQW PLRMEVAGFR SVPLSYAALR LGVDTLRRCG VGGCESREHG GCLLLCWRSW  360
PLCSVSAWRP DRGSAYGVGS EELYLSPSAP PAHCFEELMC *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A2e-272337097380Protein SCARECROW
5b3h_A1e-272337096379Protein SCARECROW
5b3h_D1e-272337096379Protein SCARECROW
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025827469.10.0scarecrow-like protein 3
TrEMBLA0A2S3ICA30.0A0A2S3ICA3_9POAL; Uncharacterized protein
STRINGSi028262m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP60438176
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50420.13e-47scarecrow-like 3