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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pahal.C00263.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | NAC | ||||||||
Protein Properties | Length: 367aa MW: 40903.4 Da PI: 6.8368 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 162.9 | 1.2e-50 | 11 | 138 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 lp+GfrFhPtdeel+v+yL +++++ ++++ +i+ev+iy+++PwdLp+k+ +e+ewyfFs+rd+ky++g r+nra+ sgyWkatg+dk++l + Pahal.C00263.1 11 LPAGFRFHPTDEELIVHYLMNQASSLPCPV-PIIAEVNIYQCNPWDLPAKALFGENEWYFFSPRDRKYPNGARPNRAAGSGYWKATGTDKAILLT 104 799***************************.88***************8877899*************************************998 PP NAM 96 .kgelvglkktLvfykgrapkgektdWvmheyrl 128 ++e++ +kk Lvfy+g+ pkg+ktdW+mheyrl Pahal.C00263.1 105 pTSENIAVKKALVFYSGKPPKGVKTDWIMHEYRL 138 89999***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 5.1E-62 | 6 | 165 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 57.388 | 11 | 165 | IPR003441 | NAC domain |
Pfam | PF02365 | 5.6E-25 | 12 | 138 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 367 aa Download sequence Send to blast |
MPSATSRLPN LPAGFRFHPT DEELIVHYLM NQASSLPCPV PIIAEVNIYQ CNPWDLPAKA 60 LFGENEWYFF SPRDRKYPNG ARPNRAAGSG YWKATGTDKA ILLTPTSENI AVKKALVFYS 120 GKPPKGVKTD WIMHEYRLTG ANKTTKRRGS SMRLDDWVLC RIHKKSNSFQ FSDQDQEGST 180 VEEESLNNNM NGTIAASPKS EANDDHDHQF HQTTMTISKS YSITDLLNSI DYSALSQLLD 240 APAEPDEPPL IYPTTTQTHQ AHYNNNVNRN SHFNLPQVDA CSSDYVAPNN CNGPKRKRVM 300 TMDGADSSFD DGSSNFSRKL KLPSDSRSSG HSHFGSTTSS YCNQQLVDTS GFQHSSLLSY 360 PFLEMQ* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 2e-72 | 10 | 170 | 14 | 173 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 295 | 320 | RKRVMTMDGADSSFDDGSSNFSRKLK |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JN673545 | 0.0 | JN673545.1 Panicum virgatum cultivar Summer VS16 NAC transcription factor mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025809798.1 | 0.0 | NAC domain-containing protein 67-like | ||||
TrEMBL | A0A2S3H5F3 | 0.0 | A0A2S3H5F3_9POAL; Uncharacterized protein | ||||
STRING | Si026530m | 0.0 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3803 | 37 | 75 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69490.1 | 1e-83 | NAC-like, activated by AP3/PI |
Link Out ? help Back to Top | |
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Phytozome | Pahal.C00263.1 |