PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.C00262.2
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family NAC
Protein Properties Length: 323aa    MW: 34451.1 Da    PI: 8.5746
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.C00262.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM103.72.4e-3228554129
             NAM  54 eekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk........kgelvglkktLvfykgrapkgektdWvmheyrle 129
                     +ekewyfF+++d ky+tg r+nratk+gyWkatgkd+e+++         ++elvg+kktLvfy grap+g+kt+Wvmhe+rle
  Pahal.C00262.2   2 GEKEWYFFCHKDMKYPTGMRTNRATKEGYWKATGKDREIFKPaaaaaegaGRELVGMKKTLVFYMGRAPRGSKTNWVMHEFRLE 85 
                     578**************************************9888888777777***************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100539.0771111IPR003441NAC domain
SuperFamilySSF1019411.44E-362111IPR003441NAC domain
PfamPF023651.2E-15684IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 323 aa     Download sequence    Send to blast
MGEKEWYFFC HKDMKYPTGM RTNRATKEGY WKATGKDREI FKPAAAAAEG AGRELVGMKK  60
TLVFYMGRAP RGSKTNWVMH EFRLEGKSRN SNSNLRFNPK DEWVVCKVHH KNGEASINKP  120
AEEYSVATPN VSSVVSDGTG EGDEFLDSMI NPMYFNSASS LPSTTTTINA AAPPHNADYS  180
LSSAAGATTA TTTSSFVDLP NYGFNDATAS YNLHQQVAVA SSASSTNSSS SYSSLWNMLL  240
NADHNQAMGS YNLHHQALVA KALGGNFAGG LPSSSSVTGI LQHNYSQGVP QQKLGNNYGD  300
SSTSAAIGPA ATKNLGAPPN GY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A1e-31111671173NAC domain-containing protein 19
3swm_B1e-31111671173NAC domain-containing protein 19
3swm_C1e-31111671173NAC domain-containing protein 19
3swm_D1e-31111671173NAC domain-containing protein 19
3swp_A1e-31111671173NAC domain-containing protein 19
3swp_B1e-31111671173NAC domain-containing protein 19
3swp_C1e-31111671173NAC domain-containing protein 19
3swp_D1e-31111671173NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in stress response (By similarity). Binds to DNA-specific sequences of CLPD1 and OAT promoters in vitro (PubMed:18813954). {ECO:0000250|UniProtKB:Q7F2L3, ECO:0000269|PubMed:18813954}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salt and cold stresses. {ECO:0000269|PubMed:18813954}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9560084e-95EU956008.1 Zea mays clone 1555391 NAC domain-containing protein 77 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025808112.10.0NAC domain-containing protein 45-like
SwissprotQ5CD172e-73NAC77_ORYSJ; NAC domain-containing protein 77
TrEMBLA0A2S3H5970.0A0A2S3H597_9POAL; Uncharacterized protein
STRINGPavir.J39049.1.p0.0(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18270.23e-48Arabidopsis NAC domain containing protein 87